CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LAS
(
Arabidopsis lyrata
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
scaffold_105352.1
T201386_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_105352.1
GRAS
41
446
LRRLLFTAANFVSQSNFTAAQNLLSILSLNSSPHGDSTERLVHLFTKALSVRINRQQQDPTAETVATWTTNEMTMSNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFGHLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAERSSNPNSPPPSLRITGCGRDVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEEDLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDDGDMIGHFLSAIKSLNPRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQRWFGMEILDVVAAEATERKQRHRRFEIWEEMMKRFGFVNVPIGSFALSQAKLLLRLHYPSEGYNLQFLNNSLFLGWQNRLLFSVSSWK
Links
Other
GRAS
family TFs
Other
Arabidopsis lyrata
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SCL18
Arabidopsis thaliana
AT1G55580
N
0.943
Bostr.6758s0017
Boechera stricta
Bostr.6758s0017
N
0.905
Thhalv10011480m.g
Eutrema salsugineum
Thhalv10011480m.g
N
0.883
Cagra.0001s0019
Capsella grandiflora
Cagra.0001s0019
N
0.866
Carubv10011270m.g
Capsella rubella
Carubv10011270m.g
N
0.864
Bo6g034670
Brassica oleracea
Bo6g034670
N
0.848
Bra038002
Brassica rapa
Bra038002
N
0.839