BRADI1G69150 (Brachypodium distachyon)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 BRADI1G69150 T205218_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.831 0.895
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.798 0.807
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.798 0.807
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.796 0.807
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.796 0.807
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.796 0.807
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.702
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.702
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.768 0.842
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.768 0.825
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.768 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G69150.1 Homeodomain 108 164

Links

Other Homeodomain family TFs
Other Brachypodium distachyon TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00942 Aegilops tauschii F775_00942 N 0.000
F775_07224 Aegilops tauschii F775_07224 I 0.000
F775_08057 Aegilops tauschii F775_08057 I 0.000
F775_12735 Aegilops tauschii F775_12735 N 0.000
F775_16517 Aegilops tauschii F775_16517 N 0.000
F775_52611 Aegilops tauschii F775_52611 N 0.000
Aquca_007_00369 Aquilegia coerulea Aquca_007_00369 I 0.000
ANAC105 Arabidopsis lyrata fgenesh2_kg.8__2792__AT5G66300.1 I 0.000
Bostr.0568s0042 Boechera stricta Bostr.0568s0042 I 0.000
BRADI1G52187 Brachypodium distachyon BRADI1G52187 I 0.000
BRADI3G13117 Brachypodium distachyon BRADI3G13117 N 0.000
BRADI3G50067 Brachypodium distachyon BRADI3G50067 I 0.000
BRADI5G27467 Brachypodium distachyon BRADI5G27467 N 0.000
Bo7g065010 Brassica oleracea Bo7g065010 I 0.000
Bra012065 Brassica rapa Bra012065 I 0.000
PK11173.1 Cannabis sativa PK11173.1 I 0.000
Cagra.10427s0040 Capsella grandiflora Cagra.10427s0040 I 0.000
Carubv10026898m.g Capsella rubella Carubv10026898m.g I 0.000
Ca_01981 Cicer arietinum Ca_01981 I 0.000
Ca_04309 Cicer arietinum Ca_04309 I 0.000
Thhalv10005380m.g Eutrema salsugineum Thhalv10005380m.g I 0.000
GLYMA01G37310 Glycine max GLYMA01G37310 I 0.000
GLYMA02G05620 Glycine max GLYMA02G05620 I 0.000
GLYMA11G07990 Glycine max GLYMA11G07990 I 0.000
GLYMA16G24200 Glycine max GLYMA16G24200 I 0.000
GLYMA20G31551 Glycine max GLYMA20G31551 I 0.000
Gorai.003G169000 Gossypium raimondii Gorai.003G169000 I 0.000
Gorai.004G201100 Gossypium raimondii Gorai.004G201100 I 0.000
Gorai.007G048000 Gossypium raimondii Gorai.007G048000 I 0.000
Gorai.013G140700 Gossypium raimondii Gorai.013G140700 I 0.000
MLOC_19933 Hordeum vulgare MLOC_19933 N 0.000
MLOC_53086 Hordeum vulgare MLOC_53086 I 0.000
MLOC_56103 Hordeum vulgare MLOC_56103 I 0.000
MLOC_66083 Hordeum vulgare MLOC_66083 N 0.000
MLOC_67250 Hordeum vulgare MLOC_67250 N 0.000
LPERR02G21010 Leersia perrieri LPERR02G21010 I 0.000
LPERR03G01990 Leersia perrieri LPERR03G01990 I 0.000
LPERR04G16200 Leersia perrieri LPERR04G16200 I 0.000
LPERR08G00380 Leersia perrieri LPERR08G00380 N 0.000
MTR_1g096430 Medicago truncatula MTR_1g096430 I 0.000
MTR_5g021710 Medicago truncatula MTR_5g021710 I 0.000
GSMUA_Achr11G03780_001 Musa acuminata GSMUA_Achr11G03780_001 I 0.000
GSMUA_Achr11G17510_001 Musa acuminata GSMUA_Achr11G17510_001 I 0.000
GSMUA_Achr3G22360_001 Musa acuminata GSMUA_Achr3G22360_001 N 0.000
GSMUA_Achr6G36840_001 Musa acuminata GSMUA_Achr6G36840_001 I 0.000
GSMUA_Achr7G06640_001 Musa acuminata GSMUA_Achr7G06640_001 I 0.000
GSMUA_Achr8G11590_001 Musa acuminata GSMUA_Achr8G11590_001 I 0.000
OBART02G25700 Oryza barthii OBART02G25700 I 0.000
OBART03G02180 Oryza barthii OBART03G02180 I 0.000
OBART04G20020 Oryza barthii OBART04G20020 I 0.000
OBART06G00240 Oryza barthii OBART06G00240 I 0.000
OBART08G00290 Oryza barthii OBART08G00290 N 0.000
OB02G33070 Oryza brachyantha OB02G33070 I 0.000
OB03G12100 Oryza brachyantha OB03G12100 I 0.000
OB04G27030 Oryza brachyantha OB04G27030 I 0.000
OB06G10310 Oryza brachyantha OB06G10310 I 0.000
OB08G10370 Oryza brachyantha OB08G10370 N 0.000
OB10G23740 Oryza brachyantha OB10G23740 I 0.000
ORGLA03G0019500 Oryza glaberrima ORGLA03G0019500 I 0.000
ORGLA04G0171200 Oryza glaberrima ORGLA04G0171200 I 0.000
ORGLA06G0002300 Oryza glaberrima ORGLA06G0002300 I 0.000
OGLUM02G26220 Oryza glumaepatula OGLUM02G26220 I 0.000
OGLUM03G02130 Oryza glumaepatula OGLUM03G02130 I 0.000
OGLUM04G19900 Oryza glumaepatula OGLUM04G19900 I 0.000
OGLUM06G00210 Oryza glumaepatula OGLUM06G00210 I 0.000
OGLUM08G00350 Oryza glumaepatula OGLUM08G00350 N 0.000
BGIOSGA005950 Oryza indica BGIOSGA005950 I 0.000
BGIOSGA011539 Oryza indica BGIOSGA011539 I 0.000
BGIOSGA014649 Oryza indica BGIOSGA014649 I 0.000
BGIOSGA022108 Oryza indica BGIOSGA022108 I 0.000
BGIOSGA027804 Oryza indica BGIOSGA027804 N 0.000
BGIOSGA027807 Oryza indica BGIOSGA027807 N 0.000
BGIOSGA033343 Oryza indica BGIOSGA033343 I 0.000
OLONG_011521 Oryza longistaminata OLONG_011521 I 0.000
OMERI02G25220 Oryza meridionalis OMERI02G25220 I 0.000
OMERI03G02020 Oryza meridionalis OMERI03G02020 I 0.000
OMERI03G30800 Oryza meridionalis OMERI03G30800 I 0.000
OMERI06G00230 Oryza meridionalis OMERI06G00230 I 0.000
OMERI08G00600 Oryza meridionalis OMERI08G00600 N 0.000
ONIVA02G28150 Oryza nivara ONIVA02G28150 I 0.000
ONIVA03G01790 Oryza nivara ONIVA03G01790 I 0.000
ONIVA04G18230 Oryza nivara ONIVA04G18230 I 0.000
ONIVA06G00260 Oryza nivara ONIVA06G00260 I 0.000
ONIVA08G00280 Oryza nivara ONIVA08G00280 N 0.000
OPUNC02G23550 Oryza punctata OPUNC02G23550 I 0.000
OPUNC03G01920 Oryza punctata OPUNC03G01920 I 0.000
OPUNC04G17680 Oryza punctata OPUNC04G17680 I 0.000
OPUNC06G00220 Oryza punctata OPUNC06G00220 I 0.000
OPUNC08G00360 Oryza punctata OPUNC08G00360 N 0.000
ORUFI02G27110 Oryza rufipogon ORUFI02G27110 I 0.000
ORUFI03G01920 Oryza rufipogon ORUFI03G01920 I 0.000
ORUFI04G21580 Oryza rufipogon ORUFI04G21580 I 0.000
ORUFI06G00250 Oryza rufipogon ORUFI06G00250 I 0.000
ORUFI08G00330 Oryza rufipogon ORUFI08G00330 N 0.000
OS02G0643600 Oryza sativa OS02G0643600 I 0.000
OS04G0536500 Oryza sativa OS04G0536500 I 0.000
OS06G0104200 Oryza sativa OS06G0104200 I 0.000
OS10G0532000 Oryza sativa OS10G0532000 I 0.000
Pavir.Da02426 Panicum virgatum Pavir.Da02426 I 0.000
Pavir.Gb00744 Panicum virgatum Pavir.Gb00744 I 0.000
Pavir.Ib00161 Panicum virgatum Pavir.Ib00161 I 0.000
Pavir.J07126 Panicum virgatum Pavir.J07126 I 0.000
Pavir.J20890 Panicum virgatum Pavir.J20890 N 0.000
Pavir.J26987 Panicum virgatum Pavir.J26987 I 0.000
Pavir.J31179 Panicum virgatum Pavir.J31179 N 0.000
Pavir.J39804 Panicum virgatum Pavir.J39804 I 0.000
e_gw1.201.156.1 Physcomitrella patens e_gw1.201.156.1 I 0.000
e_gw1.70.85.1 Physcomitrella patens e_gw1.70.85.1 N 0.000
fgenesh1_pg.scaffold_182000024 Physcomitrella patens fgenesh1_pg.scaffold_182000024 I 0.000
POPTR_0007s13910 Populus trichocarpa POPTR_0007s13910 I 0.000
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I 0.000
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I 0.000
SELMODRAFT_451784 Selaginella moellendorffii SELMODRAFT_451784 I 0.000
SELMODRAFT_57388 Selaginella moellendorffii SELMODRAFT_57388 I 0.000
SELMODRAFT_89986 Selaginella moellendorffii SELMODRAFT_89986 I 0.000
SELMODRAFT_93824 Selaginella moellendorffii SELMODRAFT_93824 I 0.000
Si006829m.g Setaria italica Si006829m.g I 0.000
Si010504m.g Setaria italica Si010504m.g I 0.000
Si014149m.g Setaria italica Si014149m.g N 0.000
Si017679m.g Setaria italica Si017679m.g I 0.000
Si022723m.g Setaria italica Si022723m.g I 0.000
Si036363m.g Setaria italica Si036363m.g I 0.000
Solyc08g079120.1 Solanum lycopersicum Solyc08g079120.1 I 0.000
Sb01g048730 Sorghum bicolor Sb01g048730 I 0.000
Sb06g023780 Sorghum bicolor Sb06g023780 I 0.000
Sb06g034010 Sorghum bicolor Sb06g034010 N 0.000
Sb07g000470 Sorghum bicolor Sb07g000470 N 0.000
Sb10g000460 Sorghum bicolor Sb10g000460 I 0.000
Traes_2AL_8EE7F34F6 Triticum aestivum Traes_2AL_8EE7F34F6 N 0.000
Traes_2AL_C0670BBDD Triticum aestivum Traes_2AL_C0670BBDD N 0.000
Traes_2AL_CB84F42D2 Triticum aestivum Traes_2AL_CB84F42D2 N 0.000
Traes_2AL_F001B4F26 Triticum aestivum Traes_2AL_F001B4F26 N 0.000
Traes_2BL_0AED4E377 Triticum aestivum Traes_2BL_0AED4E377 N 0.000
Traes_2BL_CBFB7D720 Triticum aestivum Traes_2BL_CBFB7D720 N 0.000
Traes_2DL_607AD3522 Triticum aestivum Traes_2DL_607AD3522 N 0.000
Traes_4AL_F853C8660 Triticum aestivum Traes_4AL_F853C8660 I 0.000
Traes_6AL_BB7207AD1 Triticum aestivum Traes_6AL_BB7207AD1 I 0.000
Traes_6BL_8F77BF933 Triticum aestivum Traes_6BL_8F77BF933 I 0.000
Traes_6DL_D0BE06357 Triticum aestivum Traes_6DL_D0BE06357 I 0.000
Traes_7AS_6398221B7 Triticum aestivum Traes_7AS_6398221B7 I 0.000
Traes_7DL_DF64397D7 Triticum aestivum Traes_7DL_DF64397D7 N 0.000
Traes_7DS_7F0AF83B0 Triticum aestivum Traes_7DS_7F0AF83B0 I 0.000
TRIUR3_06372 Triticum urartu TRIUR3_06372 N 0.000
TRIUR3_08851 Triticum urartu TRIUR3_08851 I 0.000
TRIUR3_10969 Triticum urartu TRIUR3_10969 N 0.000
TRIUR3_10971 Triticum urartu TRIUR3_10971 N 0.000
TRIUR3_20707 Triticum urartu TRIUR3_20707 I 0.000
TRIUR3_24878 Triticum urartu TRIUR3_24878 N 0.000
AC212859.3_FG008 Zea mays AC212859.3_FG008 N 0.000
GRMZM2G041668 Zea mays GRMZM2G041668 I 0.000
GRMZM2G048826 Zea mays GRMZM2G048826 N 0.000
GRMZM2G178998 Zea mays GRMZM2G178998 I 0.000
GRMZM2G315140 Zea mays GRMZM2G315140 I 0.000
GRMZM2G354151 Zea mays GRMZM2G354151 I 0.000
GRMZM2G440219 Zea mays GRMZM2G440219 I 0.000