CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

dll-a *(Ciona intestinalis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSCING00000004370	T207820_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Dll M02112_2.00	Drosophila melanogaster	NVTAATTANN	NNTAATTABN	PBM Weirauch et al.(2014) pTH5506	0.846	0.912
Dll M03777_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Dll_1	0.846	0.912
Dll M03778_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Dll_2	0.846	0.912
Dll M06479_2.00	Drosophila melanogaster	TAATTDB	VHAATTA	B1H Mathelier et al.(2014) MA0187.1	0.846	0.912
Dll M06217_2.00	Drosophila melanogaster	TAATTDB	VHAATTA	B1H Zhu et al.(2011) Dll_Cell_FBgn0000157	0.846	0.912
Dll M06218_2.00	Drosophila melanogaster	TAATKR	YMATTA	B1H Zhu et al.(2011) Dll_SOLEXA_FBgn0000157	0.846	0.912
Dlx2 M00423_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Dlx2_2273	0.824	0.842
DLX2 M03118_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX2_1	0.824	0.842
Dlx2 M03254_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Dlx2_1	0.824	0.842
DLX2 M05026_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_eDBD_HT-SELEX	0.824	0.842
DLX2 M05028_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_FL_HT-SELEX	0.824	0.842
DLX2 M10674_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX2_Q6	0.824	0.842
DLX2 M05027_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_eDBD_Methyl-HT-SELEX	0.824	0.842
DLX2 M05029_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX2_FL_Methyl-HT-SELEX	0.824	0.842
Dlx4 M00409_2.00	Mus musculus	NWAATNDN	NHNATTWN	PBM Berger et al.(2008) Dlx4_3488	0.820	0.807
DLX4 M03112_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX4_1	0.820	0.807
DLX4 M05002_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX4_eDBD_HT-SELEX	0.820	0.807
DLX4 M05005_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX4_FL_HT-SELEX	0.820	0.807
DLX4 M05003_2.00	Homo sapiens	NTAAYRAB	VTYRTTAN	SELEX Yin et al.(2017) DLX4_eDBD_Methyl-HT-SELEX_1	0.820	0.807
DLX4 M05004_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX4_eDBD_Methyl-HT-SELEX_2	0.820	0.807
DLX4 M05006_2.00	Homo sapiens	NTAAYKAB	VTMRTTAN	SELEX Yin et al.(2017) DLX4_FL_Methyl-HT-SELEX_1	0.820	0.807
DLX4 M05007_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX4_FL_Methyl-HT-SELEX_2	0.820	0.807
Dlx1 M00491_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Dlx1_1741	0.816	0.842
DLX1 M03166_2.00	Homo sapiens	NNTAATTDNN	NNHAATTANN	SELEX Jolma et al.(2013) DLX1_1	0.816	0.842
Dlx1 M03281_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Dlx1_1	0.816	0.842
DLX1 M05176_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX1_eDBD_HT-SELEX	0.816	0.842
DLX1 M05178_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX1_FL_HT-SELEX	0.816	0.842
DLX1 M05177_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX1_eDBD_Methyl-HT-SELEX	0.816	0.842
DLX1 M05179_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX1_FL_Methyl-HT-SELEX	0.816	0.842
DLX6 M03078_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX6_1	0.816	0.825
DLX6 M04905_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX6_eDBD_HT-SELEX	0.816	0.825
DLX6 M04906_2.00	Homo sapiens	NTAAYKAB	VTMRTTAN	SELEX Yin et al.(2017) DLX6_eDBD_Methyl-HT-SELEX_1	0.816	0.825
DLX6 M04907_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX6_eDBD_Methyl-HT-SELEX_2	0.816	0.825
Dlx5 M00449_2.00	Mus musculus	WRATNDN	NHNATYW	PBM Berger et al.(2008) Dlx5_3419	0.814	0.825
DLX5 M03095_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX5_1	0.814	0.825
DLX5 M04953_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX5_eDBD_HT-SELEX	0.814	0.825
DLX5 M04956_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX5_FL_HT-SELEX	0.814	0.825
Dlx5 M09195_2.00	Mus musculus	WAATTRYWKBB	VVMWRYAATTW	Misc Kulakovskiy et al.(2013) DLX5_MOUSE.H11MO.0.C	0.814	0.825
DLX5 M10650_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX5_Q3	0.814	0.825
DLX5 M04954_2.00	Homo sapiens	NTAAYDAB	VTHRTTAN	SELEX Yin et al.(2017) DLX5_eDBD_Methyl-HT-SELEX_1	0.814	0.825
DLX5 M04955_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX5_eDBD_Methyl-HT-SELEX_2	0.814	0.825
DLX5 M04957_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) DLX5_FL_Methyl-HT-SELEX_1	0.814	0.825
DLX5 M04958_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX5_FL_Methyl-HT-SELEX_2	0.814	0.825
Dlx3 M00387_2.00	Mus musculus	NTAATDRNN	NNYHATTAN	PBM Berger et al.(2008) Dlx3_1030	0.813	0.825
DLX3 M03081_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) DLX3_1	0.813	0.825
DLX3 M04922_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_eDBD_HT-SELEX	0.813	0.825
DLX3 M04925_2.00	Homo sapiens	NTAATTRB	VYAATTAN	SELEX Yin et al.(2017) DLX3_FL_HT-SELEX	0.813	0.825
DLX3 M09129_2.00	Homo sapiens	RVTAATTRVH	DBYAATTABY	Misc Kulakovskiy et al.(2013) DLX3_HUMAN.H11MO.0.C	0.813	0.825
Dlx3 M09172_2.00	Mus musculus	RVTAATTRVH	DBYAATTABY	Misc Kulakovskiy et al.(2013) DLX3_MOUSE.H11MO.0.C	0.813	0.825
dlx3.L M10803_2.00	Xenopus laevis	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_02	0.813	0.825
DLX3 M10638_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_Q3	0.813	0.825
DLX3 M10639_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$DLX3_Q6	0.813	0.825
dlx3.L M10804_2.00	Xenopus laevis	YAWRTAAAYAWWRY	RYWWTRTTTAYWWR	Transfac Matys et al.(2006) V$XFD1_01	0.813	0.825
DLX3 M04923_2.00	Homo sapiens	NTWAYKHB	VDMRTWAN	SELEX Yin et al.(2017) DLX3_eDBD_Methyl-HT-SELEX_1	0.813	0.825
DLX3 M04924_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_eDBD_Methyl-HT-SELEX_2	0.813	0.825
DLX3 M04926_2.00	Homo sapiens	NTWAYGHB	VDCRTWAN	SELEX Yin et al.(2017) DLX3_FL_Methyl-HT-SELEX_1	0.813	0.825
DLX3 M04927_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) DLX3_FL_Methyl-HT-SELEX_2	0.813	0.825
NEMVEDRAFT_v1g8907 M02154_2.00	Nematostella vectensis	NTAATDRNNN	NNNYHATTAN	PBM Weirauch et al.(2014) pTH6483	0.675	0.544
MSX2 M00290_2.00	Homo sapiens	WDATNDNN	NNHNATHW	PBM Barrera et al.(2016) MSX2_REF	0.670	0.579
Msx2 M00414_2.00	Mus musculus	HRATKRNN	NNYMATYD	PBM Berger et al.(2008) Msx2_3449	0.670	0.579
Msx3 M00429_2.00	Mus musculus	TAATKDNN	NNHMATTA	PBM Berger et al.(2008) Msx3_3206	0.670	0.579
Msx1 M00501_2.00	Mus musculus	NHDATND	HNATHDN	PBM Berger et al.(2008) Msx1_3031	0.670	0.579
MSX1 M03184_2.00	Homo sapiens	TAATTRBHHNHTAATTRN	NYAATTADNDDVYAATTA	SELEX Jolma et al.(2013) MSX1_1	0.670	0.579
MSX1 M03185_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) MSX1_2	0.670	0.579
MSX1 M03186_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) MSX1_3	0.670	0.579
MSX2 M03127_2.00	Homo sapiens	TAATTRBHWKWTAATTGV	BCAATTAWMWDVYAATTA	SELEX Jolma et al.(2013) MSX2_1	0.670	0.579
MSX2 M03128_2.00	Homo sapiens	NTAATTGB	VCAATTAN	SELEX Jolma et al.(2013) MSX2_2	0.670	0.579
Msx3 M03255_2.00	Mus musculus	TAATTGSHHNNTAATTRN	NYAATTANNDDSCAATTA	SELEX Jolma et al.(2013) Msx3_1	0.670	0.579
Msx3 M03256_2.00	Mus musculus	NTAATTRN	NYAATTAN	SELEX Jolma et al.(2013) Msx3_2	0.670	0.579
MSX1 M05221_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) MSX1_eDBD_HT-SELEX	0.670	0.579
MSX1 M05224_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_FL_HT-SELEX	0.670	0.579
MSX2 M05060_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX2_eDBD_HT-SELEX	0.670	0.579
MSX1 M10715_2.00	Homo sapiens	HNBTWWNTG	CANWWAVND	Transfac Matys et al.(2006) V$MSX1_01	0.670	0.579
MSX1 M10716_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX1_Q5_01	0.670	0.579
MSX1 M10717_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX1_Q5	0.670	0.579
MSX2 M10677_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX2_Q3	0.670	0.579
MSX2 M10678_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MSX2_Q6	0.670	0.579
MSX2 M00288_2.00	Homo sapiens	NTAATNDN	NHNATTAN	PBM Barrera et al.(2016) MSX2_P148H	0.670	0.579
MSX1 M05222_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_eDBD_Methyl-HT-SELEX_1	0.670	0.579
MSX1 M05223_2.00	Homo sapiens	NTWAYGMB	VKCRTWAN	SELEX Yin et al.(2017) MSX1_eDBD_Methyl-HT-SELEX_2	0.670	0.579
MSX1 M05225_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX1_FL_Methyl-HT-SELEX_1	0.670	0.579
MSX1 M05226_2.00	Homo sapiens	NTWAYGWB	VWCRTWAN	SELEX Yin et al.(2017) MSX1_FL_Methyl-HT-SELEX_2	0.670	0.579
MSX2 M05061_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MSX2_eDBD_Methyl-HT-SELEX_1	0.670	0.579
MSX2 M05062_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) MSX2_eDBD_Methyl-HT-SELEX_2	0.670	0.579
Dr M00555_2.00	Drosophila melanogaster	TAATTRNN	NNYAATTA	PBM Busser et al.(2012a) Msh	0.670	0.561
Dr M06482_2.00	Drosophila melanogaster	TAATTGS	SCAATTA	B1H Mathelier et al.(2014) MA0188.1	0.670	0.561
Dr M06229_2.00	Drosophila melanogaster	TAATTGSHB	VDSCAATTA	B1H Zhu et al.(2011) Dr_Cell_FBgn0000492	0.670	0.561
Dr M06230_2.00	Drosophila melanogaster	TAATTR	YAATTA	B1H Zhu et al.(2011) Dr_SOLEXA_FBgn0000492	0.670	0.561
ceh-23 M00671_2.00	Caenorhabditis elegans	HTAATTRNNN	NNNYAATTAD	PBM Narasimhan et al.(2015) pTH9478	0.666	0.491
MSX2 M00289_2.00	Homo sapiens	WDATWDNN	NNHWATHW	PBM Barrera et al.(2016) MSX2_R172H	0.662	0.561
bsh M02113_2.00	Drosophila melanogaster	NNTAAYBDNN	NNHVRTTANN	PBM Weirauch et al.(2014) pTH6569	0.658	0.544
bsh M03786_2.00	Drosophila melanogaster	TAATYTAATTA	TAATTARATTA	SELEX Nitta et al.(2015) bsh_1	0.658	0.544
bsh M03787_2.00	Drosophila melanogaster	TAATTRVWTAATKR	YMATTAWBYAATTA	SELEX Nitta et al.(2015) bsh_2	0.658	0.544
bsh M03788_2.00	Drosophila melanogaster	NTAATBRN	NYVATTAN	SELEX Nitta et al.(2015) bsh_3	0.658	0.544
bsh M06483_2.00	Drosophila melanogaster	YTAATBR	YVATTAR	B1H Mathelier et al.(2014) MA0214.1	0.658	0.544
bsh M06231_2.00	Drosophila melanogaster	HYTAATBRV	BYVATTARD	B1H Zhu et al.(2011) Bsh_Cell_FBgn0000529	0.658	0.544
bsh M06232_2.00	Drosophila melanogaster	NTAATKR	YMATTAN	B1H Zhu et al.(2011) Bsh_SOLEXA_FBgn0000529	0.658	0.544
Barx2 M00457_2.00	Mus musculus	NTAABNDNN	NNHNVTTAN	PBM Berger et al.(2008) Barx2_3447	0.657	0.544
BARX2 M04915_2.00	Homo sapiens	NTAAYKRTTWWN	NWWAAYMRTTAN	SELEX Yin et al.(2017) BARX2_FL_HT-SELEX	0.657	0.544
BARX2 M04916_2.00	Homo sapiens	NTAAYKRTTWWN	NWWAAYMRTTAN	SELEX Yin et al.(2017) BARX2_FL_Methyl-HT-SELEX	0.657	0.544
Bsx M00516_2.00	Mus musculus	NTAAYBDNN	NNHVRTTAN	PBM Berger et al.(2008) Bsx_3483	0.656	0.526
BSX M03235_2.00	Homo sapiens	NTAATBRN	NYVATTAN	SELEX Jolma et al.(2013) BSX_1	0.656	0.526
BSX M05377_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) BSX_eDBD_HT-SELEX_1	0.656	0.526
BSX M05378_2.00	Homo sapiens	BTAATBRV	BYVATTAV	SELEX Yin et al.(2017) BSX_eDBD_HT-SELEX_2	0.656	0.526
BSX M05379_2.00	Homo sapiens	NTAAYGHB	VDCRTTAN	SELEX Yin et al.(2017) BSX_eDBD_Methyl-HT-SELEX_1	0.656	0.526
BSX M05380_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) BSX_eDBD_Methyl-HT-SELEX_2	0.656	0.526
Nkx1-1 M00442_2.00	Mus musculus	NNTAATNDNN	NNHNATTANN	PBM Berger et al.(2008) Nkx1-1_3856	0.653	0.544
Nkx1-2 M00503_2.00	Mus musculus	NNTAAWNDN	NHNWTTANN	PBM Berger et al.(2008) Nkx1-2_3214	0.653	0.544
slou M00557_2.00	Drosophila melanogaster	NNTAATDRN	NYHATTANN	PBM Busser et al.(2012a) Slou	0.653	0.544
slou M03798_2.00	Drosophila melanogaster	VBTAATTRSB	VSYAATTAVB	SELEX Nitta et al.(2015) slou_1	0.653	0.544
slou M06494_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Mathelier et al.(2014) MA0245.1	0.653	0.544
slou M06262_2.00	Drosophila melanogaster	BYTAATKR	YMATTARV	B1H Zhu et al.(2011) Slou_Cell_FBgn0002941	0.653	0.544
slou M06263_2.00	Drosophila melanogaster	HTAATKR	YMATTAD	B1H Zhu et al.(2011) Slou_SOLEXA_FBgn0002941	0.653	0.544
Barx1 M00413_2.00	Mus musculus	NNTAAYBDNN	NNHVRTTANN	PBM Berger et al.(2008) Barx1_2877	0.643	0.509
barx1 M02107_2.00	Tetraodon nigroviridis	NTAAYNNNN	NNNNRTTAN	PBM Weirauch et al.(2014) pTH6449	0.643	0.509
BARX1 M03144_2.00	Homo sapiens	TAATBGNWWWTTAATBR	YVATTAAWWWNCVATTA	SELEX Jolma et al.(2013) BARX1_1	0.643	0.509
BARX1 M03145_2.00	Homo sapiens	NTAATBRN	NYVATTAN	SELEX Jolma et al.(2013) BARX1_2	0.643	0.509
Barx1 M09181_2.00	Mus musculus	NNWAAKKGYTWH	DWARCMMTTWNN	Misc Kulakovskiy et al.(2013) BARX1_MOUSE.H11MO.0.C	0.643	0.509
Lhx1 M00405_2.00	Mus musculus	TRATDRNNN	NNNYHATYA	PBM Berger et al.(2008) Lhx1_2240	0.642	0.386
Lhx5 M00445_2.00	Mus musculus	TAATKRNNN	NNNYMATTA	PBM Berger et al.(2008) Lhx5_2279	0.642	0.386
LHX1 M05410_2.00	Homo sapiens	NTRATBRN	NYVATYAN	SELEX Yin et al.(2017) LHX1_eDBD_HT-SELEX	0.642	0.386
LHX5 M04936_2.00	Homo sapiens	NTAATTRS	SYAATTAN	SELEX Yin et al.(2017) LHX5_FL_HT-SELEX	0.642	0.386
LHX1 M05411_2.00	Homo sapiens	NHRAYGHN	NDCRTYDN	SELEX Yin et al.(2017) LHX1_eDBD_Methyl-HT-SELEX	0.642	0.386
LHX5 M04937_2.00	Homo sapiens	NTAAYGAN	NTCRTTAN	SELEX Yin et al.(2017) LHX5_FL_Methyl-HT-SELEX_1	0.642	0.386
LHX5 M04938_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) LHX5_FL_Methyl-HT-SELEX_2	0.642	0.386
KLLA0_D10043g M02140_2.00	Kluyveromyces lactis	NNNNWWNNNN	NNNNWWNNNN	PBM Weirauch et al.(2014) pTH6070	0.640	0.368
unpg M03836_2.00	Drosophila melanogaster	SSTAATYRVN	NBYRATTASS	SELEX Nitta et al.(2015) unpg_1	0.640	0.509
unpg M06517_2.00	Drosophila melanogaster	BTAATTR	YAATTAV	B1H Mathelier et al.(2014) MA0251.1	0.640	0.509
unpg M06311_2.00	Drosophila melanogaster	NBTAATTR	YAATTAVN	B1H Zhu et al.(2011) Unpg_Cell_FBgn0015561	0.640	0.509
unpg M06312_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Unpg_SOLEXA_FBgn0015561	0.640	0.509
Mnx1 M00388_2.00	Mus musculus	NTAATBDNNN	NNNHVATTAN	PBM Berger et al.(2008) Hlxb9_3422	0.638	0.544
MNX1 M03143_2.00	Homo sapiens	NHTAATTRNH	DNYAATTADN	SELEX Jolma et al.(2013) MNX1_1	0.638	0.544
MNX1 M05126_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MNX1_eDBD_HT-SELEX	0.638	0.544
MNX1 M05127_2.00	Homo sapiens	HTAAYGHB	VDCRTTAD	SELEX Yin et al.(2017) MNX1_eDBD_Methyl-HT-SELEX_1	0.638	0.544
MNX1 M05128_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) MNX1_eDBD_Methyl-HT-SELEX_2	0.638	0.544
Barhl1 M00433_2.00	Mus musculus	NTAAWNRNN	NNYNWTTAN	PBM Berger et al.(2008) Barhl1_2590	0.635	0.561
Barhl1 M03258_2.00	Mus musculus	NNTAAWYGNH	DNCRWTTANN	SELEX Jolma et al.(2013) Barhl1_1	0.635	0.561
Barhl1 M03259_2.00	Mus musculus	NNTAADNRNN	NNYNHTTANN	SELEX Jolma et al.(2013) Barhl1_2	0.635	0.561
Barhl1 M03260_2.00	Mus musculus	TAAWYGNYNNTAAWYG	CRWTTANNRNCRWTTA	SELEX Jolma et al.(2013) Barhl1_3	0.635	0.561
BARHL1 M05091_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_HT-SELEX_1	0.635	0.561
BARHL1 M05092_2.00	Homo sapiens	NTAADBGN	NCVHTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_HT-SELEX_2	0.635	0.561
BARHL1 M05093_2.00	Homo sapiens	NTAADKGN	NCMHTTAN	SELEX Yin et al.(2017) BARHL1_eDBD_Methyl-HT-SELEX	0.635	0.561
Lim1 M03853_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Lim1_1	0.631	0.368
Lim1 M06529_2.00	Drosophila melanogaster	TTAATTA	TAATTAA	B1H Mathelier et al.(2014) MA0194.1	0.631	0.368
Lim1 M06332_2.00	Drosophila melanogaster	TTAATTA	TAATTAA	B1H Zhu et al.(2011) Lim1_Cell_FBgn0026411	0.631	0.368
Lim1 M06333_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) Lim1_SOLEXA_FBgn0026411	0.631	0.368
btn M03832_2.00	Drosophila melanogaster	NNTAATKANB	VNTMATTANN	SELEX Nitta et al.(2015) btn_1	0.629	0.456
btn M03833_2.00	Drosophila melanogaster	VNTAATKABN	NVTMATTANB	SELEX Nitta et al.(2015) btn_2	0.629	0.456
btn M06515_2.00	Drosophila melanogaster	DTAATKA	TMATTAH	B1H Mathelier et al.(2014) MA0215.1	0.629	0.456
btn M06307_2.00	Drosophila melanogaster	NDTAATKA	TMATTAHN	B1H Zhu et al.(2011) Btn_Cell_FBgn0014949	0.629	0.456
btn M06308_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Zhu et al.(2011) Btn_SOLEXA_FBgn0014949	0.629	0.456
Meox1 M00384_2.00	Mus musculus	NTRATKRNN	NNYMATYAN	PBM Berger et al.(2008) Meox1_2310	0.629	0.439
MEOX1 M03077_2.00	Homo sapiens	NNTAATTASN	NSTAATTANN	SELEX Jolma et al.(2013) MEOX1_1	0.629	0.439
MEOX1 M04901_2.00	Homo sapiens	NTDAYGHB	VDCRTHAN	SELEX Yin et al.(2017) MEOX1_FL_HT-SELEX_1	0.629	0.439
MEOX1 M04902_2.00	Homo sapiens	NTMATKRN	NYMATKAN	SELEX Yin et al.(2017) MEOX1_FL_HT-SELEX_2	0.629	0.439
MEOX1 M04903_2.00	Homo sapiens	NTAAYGWB	VWCRTTAN	SELEX Yin et al.(2017) MEOX1_FL_Methyl-HT-SELEX_1	0.629	0.439
MEOX1 M04904_2.00	Homo sapiens	NTAATKRN	NYMATTAN	SELEX Yin et al.(2017) MEOX1_FL_Methyl-HT-SELEX_2	0.629	0.439
ceh-51 M00678_2.00	Caenorhabditis elegans	NNDAKDRNN	NNYHMTHNN	PBM Narasimhan et al.(2015) pTH9353	0.629	0.439
Gbx2 M00462_2.00	Mus musculus	NNDAHNN	NNDTHNN	PBM Berger et al.(2008) Gbx2_3110	0.628	0.474
Gbx1 M00525_2.00	Mus musculus	NNTAATNR	YNATTANN	PBM Berger et al.(2008) Gbx1_2883	0.628	0.474
GBX1 M03193_2.00	Homo sapiens	NBTAATTRSB	VSYAATTAVN	SELEX Jolma et al.(2013) GBX1_1	0.628	0.474
GBX2 M03201_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_1	0.628	0.474
GBX2 M03202_2.00	Homo sapiens	TAATTRVBCAATWA	TWATTGVBYAATTA	SELEX Jolma et al.(2013) GBX2_2	0.628	0.474
GBX2 M03203_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) GBX2_3	0.628	0.474
Gbx1 M03286_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx1_1	0.628	0.474
Gbx2 M03268_2.00	Mus musculus	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) Gbx2_1	0.628	0.474
GBX2 M05265_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_HT-SELEX	0.628	0.474
GBX2 M05268_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) GBX2_FL_HT-SELEX	0.628	0.474
GBX2 M05266_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_1	0.628	0.474
GBX2 M05267_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_eDBD_Methyl-HT-SELEX_2	0.628	0.474
GBX2 M05269_2.00	Homo sapiens	NTAATTRN	NYAATTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_1	0.628	0.474
GBX2 M05270_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) GBX2_FL_Methyl-HT-SELEX_2	0.628	0.474
exex M03871_2.00	Drosophila melanogaster	NNNNYAATTNNYDN	NHRNNAATTRNNNN	SELEX Nitta et al.(2015) exex_1	0.627	0.509
exex M06544_2.00	Drosophila melanogaster	BTAATTA	TAATTAV	B1H Mathelier et al.(2014) MA0224.1	0.627	0.509
exex M06364_2.00	Drosophila melanogaster	TAATTAV	BTAATTA	B1H Zhu et al.(2011) Exex_Cell_FBgn0041156	0.627	0.509
exex M06365_2.00	Drosophila melanogaster	TAATBR	YVATTA	B1H Zhu et al.(2011) Exex_SOLEXA_FBgn0041156	0.627	0.509
B-H1 M03829_2.00	Drosophila melanogaster	VNTAAWYGNN	NNCRWTTANB	SELEX Nitta et al.(2015) B-H1_1	0.625	0.491
B-H1 M03830_2.00	Drosophila melanogaster	SNTAADBGN	NCVHTTANS	SELEX Nitta et al.(2015) B-H1_2	0.625	0.491
B-H1 M06512_2.00	Drosophila melanogaster	HTAAWYG	CRWTTAD	B1H Mathelier et al.(2014) MA0168.1	0.625	0.491
B-H2 M03810_2.00	Drosophila melanogaster	VNTAAAYGNH	DNCRTTTANB	SELEX Nitta et al.(2015) B-H2_1	0.625	0.474
B-H2 M03811_2.00	Drosophila melanogaster	SNTAADBGN	NCVHTTANS	SELEX Nitta et al.(2015) B-H2_2	0.625	0.474
B-H2 M06503_2.00	Drosophila melanogaster	WTAATTG	CAATTAW	B1H Mathelier et al.(2014) MA0169.1	0.625	0.474
Hoxd3 M00531_2.00	Mus musculus	NTAATNDN	NHNATTAN	PBM Berger et al.(2008) Hoxd3_1742	0.625	0.544
Hoxa3 M00172_2.00	Mus musculus	NTAATKRNNN	NNNYMATTAN	PBM Badis et al.(2009) Hoxa3_2783	0.625	0.544
Hoxa3 M00532_2.00	Mus musculus	NTAATKRNN	NNYMATTAN	PBM Berger et al.(2008) Hoxa3_2783	0.625	0.544
Hoxd3 M03287_2.00	Mus musculus	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) Hoxd3_1	0.625	0.544
HOXD3 M05101_2.00	Homo sapiens	CTAATTAS	STAATTAG	SELEX Yin et al.(2017) HOXD3_FL_HT-SELEX	0.625	0.544
HOXA3 M10651_2.00	Homo sapiens	SVTWNDDKB	VMHHNWABS	Transfac Matys et al.(2006) V$HOXA3_01	0.625	0.544
HOXD3 M05102_2.00	Homo sapiens	YTAAYGAY	RTCRTTAR	SELEX Yin et al.(2017) HOXD3_FL_Methyl-HT-SELEX_1	0.625	0.544
HOXD3 M05103_2.00	Homo sapiens	CTAATKAC	GTMATTAG	SELEX Yin et al.(2017) HOXD3_FL_Methyl-HT-SELEX_2	0.625	0.544
Hoxb3 M00504_2.00	Mus musculus	NTAATKRNN	NNYMATTAN	PBM Berger et al.(2008) Hoxb3_1720	0.625	0.526
HOXB3 M03126_2.00	Homo sapiens	NBTAATKRNN	NNYMATTAVN	SELEX Jolma et al.(2013) HOXB3_1	0.625	0.526
ENSTNIG00000006040 M02106_2.00	Tetraodon nigroviridis	NNNBTAAWHRBNN	NNVYDWTTAVNNN	PBM Weirauch et al.(2014) pTH6503	0.624	0.509
Barhl2 M00460_2.00	Mus musculus	NTAAWNRNN	NNYNWTTAN	PBM Berger et al.(2008) Barhl2_3868	0.624	0.509
BARHL2 M03157_2.00	Homo sapiens	NNTAAWYGNN	NNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_1	0.624	0.509
BARHL2 M03158_2.00	Homo sapiens	NNTAAWBGNN	NNCVWTTANN	SELEX Jolma et al.(2013) BARHL2_2	0.624	0.509
BARHL2 M03159_2.00	Homo sapiens	TAAWYGNNNNTAAWYR	YRWTTANNNNCRWTTA	SELEX Jolma et al.(2013) BARHL2_3	0.624	0.509
BARHL2 M03160_2.00	Homo sapiens	NNTAAWYGNH	DNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_4	0.624	0.509
BARHL2 M03161_2.00	Homo sapiens	NNTAAWYGNN	NNCRWTTANN	SELEX Jolma et al.(2013) BARHL2_5	0.624	0.509
BARHL2 M03162_2.00	Homo sapiens	TAAWYGNYNHTAAWYG	CRWTTADNRNCRWTTA	SELEX Jolma et al.(2013) BARHL2_6	0.624	0.509
BARHL2 M05164_2.00	Homo sapiens	HTAAAYGNY	RNCRTTTAD	SELEX Yin et al.(2017) BARHL2_eDBD_HT-SELEX_1	0.624	0.509
BARHL2 M05165_2.00	Homo sapiens	NTAAWTGNB	VNCAWTTAN	SELEX Yin et al.(2017) BARHL2_eDBD_HT-SELEX_2	0.624	0.509
BARHL2 M05167_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL2_FL_HT-SELEX_1	0.624	0.509
BARHL2 M05168_2.00	Homo sapiens	NTAAWYGN	NCRWTTAN	SELEX Yin et al.(2017) BARHL2_FL_HT-SELEX_2	0.624	0.509
BARHL2 M05166_2.00	Homo sapiens	NTAAWTGNB	VNCAWTTAN	SELEX Yin et al.(2017) BARHL2_eDBD_Methyl-HT-SELEX	0.624	0.509
BARHL2 M05169_2.00	Homo sapiens	NTAAWTGN	NCAWTTAN	SELEX Yin et al.(2017) BARHL2_FL_Methyl-HT-SELEX	0.624	0.509
Hoxa1 M00450_2.00	Mus musculus	NHRATKRNN	NNYMATYDN	PBM Berger et al.(2008) Hoxa1_3425	0.617	0.491
HOXA1 M03096_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) HOXA1_1	0.617	0.491
HOXA1 M04959_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) HOXA1_FL_HT-SELEX	0.617	0.491
HOXA1 M09133_2.00	Homo sapiens	NKGATGGATG	CATCCATCMN	Misc Kulakovskiy et al.(2013) HXA1_HUMAN.H11MO.0.C	0.617	0.491
Hoxa1 M09196_2.00	Mus musculus	NKGATGGATG	CATCCATCMN	Misc Kulakovskiy et al.(2013) HXA1_MOUSE.H11MO.0.C	0.617	0.491
HOXA1 M04960_2.00	Homo sapiens	NTMATKAN	NTMATKAN	SELEX Yin et al.(2017) HOXA1_FL_Methyl-HT-SELEX_1	0.617	0.491
HOXA1 M04961_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) HOXA1_FL_Methyl-HT-SELEX_2	0.617	0.491
ceh-5 M02179_2.00	Caenorhabditis elegans	NNTAATDDN	NHHATTANN	PBM Weirauch et al.(2014) pTH6562	0.614	0.491
CG18599 M06539_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Mathelier et al.(2014) MA0177.1	0.614	0.491
CG18599 M06354_2.00	Drosophila melanogaster	HTAATKA	TMATTAD	B1H Zhu et al.(2011) CG18599_Cell_FBgn0038592	0.614	0.491
CG18599 M06355_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) CG18599_SOLEXA_FBgn0038592	0.614	0.491
NK7.1 M03847_2.00	Drosophila melanogaster	VTTAAAYGDTD	HAHCRTTTAAB	SELEX Nitta et al.(2015) NK7.1_1	0.613	0.509
NK7.1 M03848_2.00	Drosophila melanogaster	NSTTAATTGVY	RBCAATTAASN	SELEX Nitta et al.(2015) NK7.1_2	0.613	0.509
NK7.1 M06524_2.00	Drosophila melanogaster	TTAATDR	YHATTAA	B1H Mathelier et al.(2014) MA0196.1	0.613	0.509
NK7.1 M06323_2.00	Drosophila melanogaster	NTTAATDR	YHATTAAN	B1H Zhu et al.(2011) NK7.1_Cell_FBgn0024321	0.613	0.509
NK7.1 M06324_2.00	Drosophila melanogaster	YTAATDR	YHATTAR	B1H Zhu et al.(2011) NK7.1_SOLEXA_FBgn0024321	0.613	0.509
en M03793_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) en_1	0.612	0.474
en M06485_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Mathelier et al.(2014) MA0220.1	0.612	0.474
en M06236_2.00	Drosophila melanogaster	NYTAATTR	YAATTARN	B1H Zhu et al.(2011) En_Cell_FBgn0000577	0.612	0.474
en M06237_2.00	Drosophila melanogaster	DBTAATKR	YMATTAVH	B1H Zhu et al.(2011) en_FlyReg_FBgn0000577	0.612	0.474
en M06238_2.00	Drosophila melanogaster	NNNTAATTRN	NYAATTANNN	B1H Zhu et al.(2011) en_SOLEXA_2_FBgn0000577	0.612	0.474
en M06239_2.00	Drosophila melanogaster	NTAATTR	YAATTAN	B1H Zhu et al.(2011) En_SOLEXA_FBgn0000577	0.612	0.474
en M09677_2.00	Drosophila melanogaster	HTAATTRN	NYAATTAD	Misc Kulakovskiy et al.(2009) en	0.612	0.474
en M10785_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$EN_Q6	0.612	0.474
En2 M00484_2.00	Mus musculus	NNYHATHN	NDATDRNN	PBM Berger et al.(2008) En2_0952	0.610	0.491
EN2 M03189_2.00	Homo sapiens	NNTAATTRNN	NNYAATTANN	SELEX Jolma et al.(2013) EN2_1	0.610	0.491
EN2 M03190_2.00	Homo sapiens	VBTAATTRNN	NNYAATTAVB	SELEX Jolma et al.(2013) EN2_2	0.610	0.491
En2 M03276_2.00	Mus musculus	VBTAATTASN	NSTAATTAVB	SELEX Jolma et al.(2013) En2_1	0.610	0.491
EN2 M05237_2.00	Homo sapiens	BTAATTRV	BYAATTAV	SELEX Yin et al.(2017) EN2_eDBD_HT-SELEX	0.610	0.491
EN2 M05238_2.00	Homo sapiens	VHTDAYGHB	VDCRTHADB	SELEX Yin et al.(2017) EN2_eDBD_Methyl-HT-SELEX_1	0.610	0.491
EN2 M05239_2.00	Homo sapiens	BTAATTRV	BYAATTAV	SELEX Yin et al.(2017) EN2_eDBD_Methyl-HT-SELEX_2	0.610	0.491
En1 M00519_2.00	Mus musculus	HNWTNNN	NNNAWND	PBM Berger et al.(2008) En1_3123	0.610	0.474
EN1 M03180_2.00	Homo sapiens	NNTAATTRVB	VBYAATTANN	SELEX Jolma et al.(2013) EN1_1	0.610	0.474
EN1 M03181_2.00	Homo sapiens	TAATTRSNYAATTA	TAATTRNSYAATTA	SELEX Jolma et al.(2013) EN1_2	0.610	0.474
EN1 M03182_2.00	Homo sapiens	BTAATTRN	NYAATTAV	SELEX Jolma et al.(2013) EN1_3	0.610	0.474
EN1 M03183_2.00	Homo sapiens	TDAKKRSNYMATTA	TAATKRNSYMMTHA	SELEX Jolma et al.(2013) EN1_4	0.610	0.474
EN1 M05218_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) EN1_eDBD_HT-SELEX	0.610	0.474
EN1 M05871_2.00	Homo sapiens	VNYAATTA	TAATTRNB	SMiLE-seq Isakova et al.(2017) EN1	0.610	0.474
EN1 M10714_2.00	Homo sapiens	RTDDTBB	VVAHHAY	Transfac Matys et al.(2006) V$EN1_01	0.610	0.474
EN1 M05219_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) EN1_eDBD_Methyl-HT-SELEX_1	0.610	0.474
EN1 M05220_2.00	Homo sapiens	NTAATTRV	BYAATTAN	SELEX Yin et al.(2017) EN1_eDBD_Methyl-HT-SELEX_2	0.610	0.474
SPU_026099 M02175_2.00	Strongylocentrotus purpuratus	KTAATTRB	VYAATTAM	PBM Weirauch et al.(2014) pTH6140	0.609	0.509
Pdx1 M00446_2.00	Mus musculus	NWRAYNNN	NNNRTYWN	PBM Berger et al.(2008) Ipf1_3815	0.609	0.491
PDX1 M03155_2.00	Homo sapiens	NTAATTRNNNYTAATTRN	NYAATTARNNNYAATTAN	SELEX Jolma et al.(2013) PDX1_1	0.609	0.491
PDX1 M03156_2.00	Homo sapiens	BTAATKRN	NYMATTAV	SELEX Jolma et al.(2013) PDX1_2	0.609	0.491
PDX1 M05161_2.00	Homo sapiens	YTAATKRB	VYMATTAR	SELEX Yin et al.(2017) PDX1_eDBD_HT-SELEX	0.609	0.491
PDX1 M09147_2.00	Homo sapiens	TGATWGATK	MATCWATCA	Misc Kulakovskiy et al.(2013) PDX1_HUMAN.H11MO.0.A	0.609	0.491
Pdx1 M09192_2.00	Mus musculus	VYTAATGRB	VYCATTARB	Misc Kulakovskiy et al.(2013) PDX1_MOUSE.H11MO.0.B	0.609	0.491
Pdx1 M09571_2.00	Mus musculus	TGATTRATKR	YMATYAATCA	Misc Heinz et al.(2010) Islet-Pdx1_SRA008281	0.609	0.491
PDX1 M10699_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_01	0.609	0.491
PDX1 M10700_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_02	0.609	0.491
PDX1 M10701_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_03	0.609	0.491
PDX1 M10702_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_04	0.609	0.491
PDX1 M10703_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_05	0.609	0.491
PDX1 M10704_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q4_01	0.609	0.491
PDX1 M10705_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q4	0.609	0.491
PDX1 M10706_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q5_01	0.609	0.491
PDX1 M10707_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q5	0.609	0.491
PDX1 M10708_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$IPF1_Q6	0.609	0.491
PDX1 M05162_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) PDX1_eDBD_Methyl-HT-SELEX_1	0.609	0.491
PDX1 M05163_2.00	Homo sapiens	YTAATKRB	VYMATTAR	SELEX Yin et al.(2017) PDX1_eDBD_Methyl-HT-SELEX_2	0.609	0.491
Gsx2 M00469_2.00	Mus musculus	NTAATDDNN	NNHHATTAN	PBM Berger et al.(2008) Gsh2_3990	0.609	0.474
GSX1 M03205_2.00	Homo sapiens	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) GSX1_1	0.609	0.474
GSX2 M03227_2.00	Homo sapiens	NNTAATKRNN	NNYMATTANN	SELEX Jolma et al.(2013) GSX2_1	0.609	0.474
GSX1 M05271_2.00	Homo sapiens	NYMATNRN	NYNATKRN	SELEX Yin et al.(2017) GSX1_eDBD_HT-SELEX	0.609	0.474
GSX2 M05329_2.00	Homo sapiens	HTAATKRS	SYMATTAD	SELEX Yin et al.(2017) GSX2_eDBD_HT-SELEX	0.609	0.474
ind M06527_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0228.1	0.609	0.474
ind M06329_2.00	Drosophila melanogaster	YVYTAATKA	TMATTARBR	B1H Zhu et al.(2011) Ind_Cell_FBgn0025776	0.609	0.474
GSX1 M05272_2.00	Homo sapiens	NTAAYGAB	VTCRTTAN	SELEX Yin et al.(2017) GSX1_eDBD_Methyl-HT-SELEX	0.609	0.474
GSX2 M05330_2.00	Homo sapiens	HTAAYGAB	VTCRTTAD	SELEX Yin et al.(2017) GSX2_eDBD_Methyl-HT-SELEX	0.609	0.474
zen M03805_2.00	Drosophila melanogaster	BTAATKRB	VYMATTAV	SELEX Nitta et al.(2015) zen_1	0.609	0.456
zen M06500_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0256.1	0.609	0.456
zen M06276_2.00	Drosophila melanogaster	NBYTAATKA	TMATTARBN	B1H Zhu et al.(2011) Zen_Cell_FBgn0004053	0.609	0.456
zen M06277_2.00	Drosophila melanogaster	AANWTWAWTG	CAWTWAWNTT	B1H Zhu et al.(2011) zen_FlyReg_FBgn0004053	0.609	0.456
zen M06278_2.00	Drosophila melanogaster	NYTAATKA	TMATTARN	B1H Zhu et al.(2011) Zen_SOLEXA_FBgn0004053	0.609	0.456
pb M03872_2.00	Drosophila melanogaster	NTRAYKRY	RYMRTYAN	SELEX Nitta et al.(2015) pb_1	0.608	0.509
pb M06545_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0238.1	0.608	0.509
pb M06366_2.00	Drosophila melanogaster	BYTAATKA	TMATTARV	B1H Zhu et al.(2011) Pb_Cell_FBgn0051481	0.608	0.509
pb M06367_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) Pb_SOLEXA_FBgn0051481	0.608	0.509
inv M06491_2.00	Drosophila melanogaster	DYTAATTR	YAATTARH	B1H Mathelier et al.(2014) MA0229.1	0.608	0.439
inv M06255_2.00	Drosophila melanogaster	DYTAATTR	YAATTARH	B1H Zhu et al.(2011) Inv_Cell_FBgn0001269	0.608	0.439
inv M06256_2.00	Drosophila melanogaster	NHTAATTRV	BYAATTADN	B1H Zhu et al.(2011) inv_SOLEXA_2_FBgn0001269	0.608	0.439
inv M06257_2.00	Drosophila melanogaster	NHTAATTRV	BYAATTADN	B1H Zhu et al.(2011) inv_SOLEXA_5_FBgn0001269	0.608	0.439
zen2 M02118_2.00	Drosophila melanogaster	NNTAATKRNN	NNYMATTANN	PBM Weirauch et al.(2014) pTH5479	0.607	0.474
zen2 M03806_2.00	Drosophila melanogaster	BTAATKAS	STMATTAV	SELEX Nitta et al.(2015) zen2_1	0.607	0.474
zen2 M03807_2.00	Drosophila melanogaster	BTAATKWNNVRNNNNYBNNWMATTAV	BTAATKWNNVRNNNNYBNNWMATTAV	SELEX Nitta et al.(2015) zen2_2	0.607	0.474
zen2 M06501_2.00	Drosophila melanogaster	BTAATKA	TMATTAV	B1H Mathelier et al.(2014) MA0257.1	0.607	0.474
zen2 M06279_2.00	Drosophila melanogaster	HNBTAATKA	TMATTAVND	B1H Zhu et al.(2011) Zen2_Cell_FBgn0004054	0.607	0.474
zen2 M06280_2.00	Drosophila melanogaster	NNNTAATKRN	NYMATTANNN	B1H Zhu et al.(2011) zen2_SOLEXA_2_FBgn0004054	0.607	0.474
zen2 M06281_2.00	Drosophila melanogaster	YTAATKR	YMATTAR	B1H Zhu et al.(2011) Zen2_SOLEXA_FBgn0004054	0.607	0.474
NOBOX M02084_2.00	Homo sapiens	NNHDATDRNN	NNYHATHDNN	PBM Weirauch et al.(2014) pTH6448	0.607	0.456
Nobox M00448_2.00	Mus musculus	NHDABDRNN	NNYHVTHDN	PBM Berger et al.(2008) Og2x_3719	0.605	0.456
Nobox M02688_2.00	Mus musculus	TAATTRSB	VSYAATTA	SELEX Mathelier et al.(2014) MA0125.1	0.605	0.456
Nobox M09194_2.00	Mus musculus	HTAATTRVB	VBYAATTAD	Misc Kulakovskiy et al.(2013) NOBOX_MOUSE.H11MO.0.C	0.605	0.456
Nobox M10766_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OG2_01	0.605	0.456
HOXB1 M05057_2.00	Homo sapiens	NTAATTAS	STAATTAN	SELEX Yin et al.(2017) HOXB1_eDBD_HT-SELEX	0.605	0.474
HOXB1 M05058_2.00	Homo sapiens	GTAATBAN	NTVATTAC	SELEX Yin et al.(2017) HOXB1_eDBD_Methyl-HT-SELEX_1	0.605	0.474
HOXB1 M05059_2.00	Homo sapiens	NTRAYGMB	VKCRTYAN	SELEX Yin et al.(2017) HOXB1_eDBD_Methyl-HT-SELEX_2	0.605	0.474
O76842_CUPSA M02199_2.00	Cupiennius salei	TTAATTAB	VTAATTAA	PBM Weirauch et al.(2014) pTH6251	0.605	0.456
lab M03797_2.00	Drosophila melanogaster	NTAATTAS	STAATTAN	SELEX Nitta et al.(2015) lab_1	0.605	0.456
lab M06493_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Mathelier et al.(2014) MA0230.1	0.605	0.456
lab M06260_2.00	Drosophila melanogaster	TTAATKA	TMATTAA	B1H Zhu et al.(2011) Lab_Cell_FBgn0002522	0.605	0.456
lab M06261_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Zhu et al.(2011) Lab_SOLEXA_FBgn0002522	0.605	0.456
Hoxd1 M00492_2.00	Mus musculus	NRATNDNN	NNHNATYN	PBM Berger et al.(2008) Hoxd1_3448	0.605	0.439
HOXD1 M05098_2.00	Homo sapiens	BTAATTAV	BTAATTAV	SELEX Yin et al.(2017) HOXD1_eDBD_HT-SELEX	0.605	0.439
Hoxd1 M10768_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD1_03	0.605	0.439
HOXD1 M05099_2.00	Homo sapiens	BTAATKAV	BTMATTAV	SELEX Yin et al.(2017) HOXD1_eDBD_Methyl-HT-SELEX_1	0.605	0.439
HOXD1 M05100_2.00	Homo sapiens	NTWAYGAB	VTCRTWAN	SELEX Yin et al.(2017) HOXD1_eDBD_Methyl-HT-SELEX_2	0.605	0.439
AAZ08039 M02221_2.00	Xenopus tropicalis	NHTAATTRNN	NNYAATTADN	PBM Weirauch et al.(2014) pTH5791	0.604	0.456
Smp_158000 M02170_2.00	Schistosoma mansoni	TTAATTRG	CYAATTAA	PBM Weirauch et al.(2014) pTH5672	0.602	0.456
VAX2 M00284_2.00	Homo sapiens	NNTAATND	HNATTANN	PBM Barrera et al.(2016) VAX2_REF	0.602	0.509
Vax1 M00398_2.00	Mus musculus	NTAATNDNN	NNHNATTAN	PBM Berger et al.(2008) Vax1_3499	0.602	0.509
Vax2 M00464_2.00	Mus musculus	NTAATDDNN	NNHHATTAN	PBM Berger et al.(2008) Vax2_3500	0.602	0.509
VAX2 M03119_2.00	Homo sapiens	YTAATKAN	NTMATTAR	SELEX Jolma et al.(2013) VAX2_1	0.602	0.509
VAX2 M05030_2.00	Homo sapiens	BTAATTRV	BYAATTAV	SELEX Yin et al.(2017) VAX2_FL_HT-SELEX	0.602	0.509
Vax1 M10764_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$VAX1_04	0.602	0.509
VAX2 M05031_2.00	Homo sapiens	BTAATTRV	BYAATTAV	SELEX Yin et al.(2017) VAX2_FL_Methyl-HT-SELEX	0.602	0.509
NANOG M05015_2.00	Homo sapiens	NYRABBVB	VBVVTYRN	SELEX Yin et al.(2017) NANOG_eDBD_HT-SELEX	0.601	0.456
NANOG M09139_2.00	Homo sapiens	NTYWRCATNWSAAWRVN	NBYWTTSWNATGYWRAN	Misc Kulakovskiy et al.(2013) NANOG_HUMAN.H11MO.0.A	0.601	0.456
NANOG M10664_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_01	0.601	0.456
NANOG M10665_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_02	0.601	0.456
NANOG M10666_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_05	0.601	0.456
NANOG M10667_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_07	0.601	0.456
NANOG M10668_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_Q3	0.601	0.456
NANOG M10669_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NANOG_Q6	0.601	0.456
NANOG M05016_2.00	Homo sapiens	NHAAYGH	DCRTTDN	SELEX Yin et al.(2017) NANOG_eDBD_Methyl-HT-SELEX_1	0.601	0.456
NANOG M05017_2.00	Homo sapiens	NYRABKRN	NYMVTYRN	SELEX Yin et al.(2017) NANOG_eDBD_Methyl-HT-SELEX_2	0.601	0.456
eve M00556_2.00	Drosophila melanogaster	NNTAATTARN	NYTAATTANN	PBM Busser et al.(2012a) Eve	0.601	0.456
eve M02115_2.00	Drosophila melanogaster	NTAATNDNN	NNHNATTAN	PBM Weirauch et al.(2014) pTH6436	0.601	0.456
eve M03794_2.00	Drosophila melanogaster	VYTAATKASN	NSTMATTARB	SELEX Nitta et al.(2015) eve_1	0.601	0.456
eve M06486_2.00	Drosophila melanogaster	YTAATKA	TMATTAR	B1H Mathelier et al.(2014) MA0221.1	0.601	0.456
eve M06240_2.00	Drosophila melanogaster	DYTAATKA	TMATTARH	B1H Zhu et al.(2011) Eve_Cell_FBgn0000606	0.601	0.456
eve M06241_2.00	Drosophila melanogaster	HKBTAAYNDTKY	RMAHNRTTAVMD	B1H Zhu et al.(2011) eve_FlyReg_FBgn0000606	0.601	0.456
eve M06242_2.00	Drosophila melanogaster	NYTAATKA	TMATTARN	B1H Zhu et al.(2011) Eve_SOLEXA_FBgn0000606	0.601	0.456
eve M09678_2.00	Drosophila melanogaster	NKHTAATKD	HMATTADMN	Misc Kulakovskiy et al.(2009) eve	0.601	0.456
eve M10786_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$EVE_Q6	0.601	0.456
VSX2 M00287_2.00	Homo sapiens	NYTAATTARN	NYTAATTARN	PBM Barrera et al.(2016) VSX2_REF	0.601	0.421
VSX2 M03124_2.00	Homo sapiens	YTAATTAN	NTAATTAR	SELEX Jolma et al.(2013) VSX2_1	0.601	0.421
VSX2 M05036_2.00	Homo sapiens	CTAATTAN	NTAATTAG	SELEX Yin et al.(2017) VSX2_eDBD_HT-SELEX	0.601	0.421
VSX2 M05039_2.00	Homo sapiens	GCYAATYWY	RWRATTRGC	SELEX Yin et al.(2017) VSX2_FL_HT-SELEX	0.601	0.421
Vsx2 M09180_2.00	Mus musculus	NNRGCTAATTAR	YTAATTAGCYNN	Misc Kulakovskiy et al.(2013) VSX2_MOUSE.H11MO.0.C	0.601	0.421
VSX2 M10676_2.00	Homo sapiens	HNNGCTAATTANBN	NVNTAATTAGCNND	Transfac Matys et al.(2006) V$CHX10_01	0.601	0.421
VSX2 M05037_2.00	Homo sapiens	VYAATTRR	YYAATTRB	SELEX Yin et al.(2017) VSX2_eDBD_Methyl-HT-SELEX_1	0.601	0.421
VSX2 M05038_2.00	Homo sapiens	NTAAYKHN	NDMRTTAN	SELEX Yin et al.(2017) VSX2_eDBD_Methyl-HT-SELEX_2	0.601	0.421
VSX2 M05040_2.00	Homo sapiens	NTAAYKVN	NBMRTTAN	SELEX Yin et al.(2017) VSX2_FL_Methyl-HT-SELEX_1	0.601	0.421
VSX2 M05041_2.00	Homo sapiens	GCYAATYWY	RWRATTRGC	SELEX Yin et al.(2017) VSX2_FL_Methyl-HT-SELEX_2	0.601	0.421
VSX2 M00285_2.00	Homo sapiens	NDTWTATTHNNN	NNNDAATAWAHN	PBM Barrera et al.(2016) VSX2_R200P	0.601	0.404
VSX2 M00286_2.00	Homo sapiens	YRWKWNN	NNWMWYR	PBM Barrera et al.(2016) VSX2_R200Q	0.601	0.404
CG32532 M03874_2.00	Drosophila melanogaster	NTAAYBNVRTTAN	NTAAYBNVRTTAN	SELEX Nitta et al.(2015) CG32532_1	0.600	0.404
CG32532 M06547_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Mathelier et al.(2014) MA0179.1	0.600	0.404
CG32532 M06370_2.00	Drosophila melanogaster	YTAATTR	YAATTAR	B1H Zhu et al.(2011) CG32532_Cell_FBgn0052532	0.600	0.404
CG32532 M06371_2.00	Drosophila melanogaster	HTAATTR	YAATTAD	B1H Zhu et al.(2011) CG32532_SOLEXA_FBgn0052532	0.600	0.404
Vsx2 M02130_2.00	Drosophila melanogaster	TTAATTAB	VTAATTAA	PBM Weirauch et al.(2014) pTH6195	0.599	0.404
Vsx2 M03880_2.00	Drosophila melanogaster	NTAATTRN	NYAATTAN	SELEX Nitta et al.(2015) Vsx2_1	0.599	0.404
Vsx2 M03881_2.00	Drosophila melanogaster	HRAYNVNNTRATKD	HMATYANNBNRTYD	SELEX Nitta et al.(2015) Vsx2_2	0.599	0.404
Vsx2 M06553_2.00	Drosophila melanogaster	KTTAATTAG	CTAATTAAM	B1H Mathelier et al.(2014) MA0180.1	0.599	0.404
Vsx2 M06382_2.00	Drosophila melanogaster	KTTAATTAG	CTAATTAAM	B1H Zhu et al.(2011) CG33980_Cell_FBgn0053980	0.599	0.404
Vsx2 M06383_2.00	Drosophila melanogaster	NNTAATTRRN	NYYAATTANN	B1H Zhu et al.(2011) CG33980_SOLEXA_2_0_FBgn0053980	0.599	0.404
Vsx2 M06384_2.00	Drosophila melanogaster	NNTAATKDN	NHMATTANN	B1H Zhu et al.(2011) CG33980_SOLEXA_2_10_FBgn0053980	0.599	0.404
Vsx2 M06385_2.00	Drosophila melanogaster	NHTAATTR	YAATTADN	B1H Zhu et al.(2011) CG33980_SOLEXA_FBgn0053980	0.599	0.404
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCINP00000009039	Homeodomain	240	296	RKPRTIYTSYQLQQLVRRFQRTQYLALPERAELAASLGVTQTQIKIWFQNRRSKYKK

Links
Other Homeodomain family TFs
Other *Ciona intestinalis* TFs

4117 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CFIO01_00053	Colletotrichum fioriniae	CFIO01_00053	N
TRIVIDRAFT_28800	Trichoderma virens	TRIVIDRAFT_28800	N
TRIVIDRAFT_40103	Trichoderma virens	TRIVIDRAFT_40103	N
VDBG_00716	Verticillium alfalfae	VDBG_00716	N

dll-a (Ciona intestinalis) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

4117 Related TFs

dll-a **(Ciona intestinalis)
Homeodomain**