DBX1 (Cavia porcellus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCPOG00000019811 T208172_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Dbx1
M00451_2.00 		Mus musculus
WTTAATTA
TAATTAAW		 PBM
Berger et al.(2008)
Dbx1_3486 		0.863 0.929
Dbx2
M00499_2.00 		Mus musculus
NNDTNNN
NNNAHNN		 PBM
Berger et al.(2008)
Dbx2_3487 		0.830 0.875
Dbx
M02128_2.00 		Drosophila melanogaster
WTTAATTA
TAATTAAW		 PBM
Weirauch et al.(2014)
pTH6051 		0.814 0.857
Dbx
M06550_2.00 		Drosophila melanogaster
TTWATKA
TMATWAA		 B1H
Mathelier et al.(2014)
MA0174.1 		0.814 0.857
Hlx
M00485_2.00 		Mus musculus
NNNAWND
HNWTNNN		 PBM
Berger et al.(2008)
Hlx1_2350 		0.733 0.714
H2.0
M06489_2.00 		Drosophila melanogaster
WTWATDA
THATWAW		 B1H
Mathelier et al.(2014)
MA0448.1 		0.732 0.714
H2.0
M06250_2.00 		Drosophila melanogaster
TWWWWDA
THAWWWA		 B1H
Zhu et al.(2011)
H2.0_Cell_FBgn0001170 		0.732 0.714
H2.0
M06251_2.00 		Drosophila melanogaster
WTWATTRN
NYAATWAW		 B1H
Zhu et al.(2011)
H2.0_SOLEXA_FBgn0001170 		0.732 0.714
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000016094 Homeodomain 186 241

Links

Other Homeodomain family TFs
Other Cavia porcellus TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00917 Aegilops tauschii F775_00917 I
AMTR_s00012p00258620 Amborella trichopoda AMTR_s00012p00258620 N
AMTR_s00009p00194700 Amborella trichopoda AMTR_s00009p00194700 N
Aquca_003_00162 Aquilegia coerulea Aquca_003_00162 N
scaffold_800693.1 Arabidopsis lyrata scaffold_800693.1 N
Bostr.3148s0115 Boechera stricta Bostr.3148s0115 N
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I
Bo9g059250 Brassica oleracea Bo9g059250 N
Bo7g065530 Brassica oleracea Bo7g065530 N
Bra027500 Brassica rapa Bra027500 N
Bra033683 Brassica rapa Bra033683 N
PK22236.1 Cannabis sativa PK22236.1 N
Cagra.19122s0001 Capsella grandiflora Cagra.19122s0001 N
Carubv10028256m.g Capsella rubella Carubv10028256m.g N
evm.TU.supercontig_44.98 Carica papaya evm.TU.supercontig_44.98 N
Cla008944 Citrullus lanatus Cla008944 I
Cla006093 Citrullus lanatus Cla006093 N
Cla008348 Citrullus lanatus Cla008348 N
Cla021877 Citrullus lanatus Cla021877 N
Ciclev10006751m.g Citrus clementina Ciclev10006751m.g N
Ciclev10022375m.g Citrus clementina Ciclev10022375m.g N
orange1.1g037433m.g Citrus sinensis orange1.1g037433m.g N
orange1.1g044013m.g Citrus sinensis orange1.1g044013m.g N
Cucsa.321760 Cucumis sativus Cucsa.321760 I
Cucsa.016990 Cucumis sativus Cucsa.016990 N
Cucsa.117650 Cucumis sativus Cucsa.117650 N
Eucgr.H00184 Eucalyptus grandis Eucgr.H00184 N
gene30215-v1.0-hybrid Fragaria vesca gene30215-v1.0-hybrid N
GLYMA12G06340 Glycine max GLYMA12G06340 N
GLYMA20G34840 Glycine max GLYMA20G34840 N
GLYMA10G32810 Glycine max GLYMA10G32810 N
GLYMA07G16290 Glycine max GLYMA07G16290 I
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N
Gorai.011G172000 Gossypium raimondii Gorai.011G172000 N
LPERR07G09750 Leersia perrieri LPERR07G09750 N
Lus10022206.g Linum usitatissimum Lus10022206.g I
Lus10022204.g Linum usitatissimum Lus10022204.g I
Lus10021213.g Linum usitatissimum Lus10021213.g I
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I
cassava32634.m1 Manihot esculenta cassava32634.m1 N
cassava4410.m1 Manihot esculenta cassava4410.m1 N
MTR_4g064873 Medicago truncatula MTR_4g064873 N
MTR_1g070250 Medicago truncatula MTR_1g070250 N
MTR_7g063220 Medicago truncatula MTR_7g063220 I
MTR_1g075430 Medicago truncatula MTR_1g075430 N
mgf024356m Mimulus guttatus mgf024356m I
GSMUA_Achr11G02150_001 Musa acuminata GSMUA_Achr11G02150_001 N
GSMUA_Achr8G14360_001 Musa acuminata GSMUA_Achr8G14360_001 N
OBART07G11660 Oryza barthii OBART07G11660 N
OB02G44430 Oryza brachyantha OB02G44430 I
OB07G18110 Oryza brachyantha OB07G18110 N
ORGLA07G0099100 Oryza glaberrima ORGLA07G0099100 N
OGLUM07G11160 Oryza glumaepatula OGLUM07G11160 N
BGIOSGA025569 Oryza indica BGIOSGA025569 N
OLONG_012182 Oryza longistaminata OLONG_012182 N
ONIVA07G09640 Oryza nivara ONIVA07G09640 N
ONIVA07G09630 Oryza nivara ONIVA07G09630 N
OPUNC07G10480 Oryza punctata OPUNC07G10480 N
ORUFI07G11810 Oryza rufipogon ORUFI07G11810 N
OS07G0417400 Oryza sativa OS07G0417400 N
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I
PDK_20s1360411g002 Phoenix dactylifera PDK_20s1360411g002 N
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I
Pm009419 Prunus mume Pm009419 N
Pm002649 Prunus mume Pm002649 N
PRUPE_ppa016491mg Prunus persica PRUPE_ppa016491mg N
PRUPE_ppa021945mg Prunus persica PRUPE_ppa021945mg N
PRUPE_ppb012667mg Prunus persica PRUPE_ppb012667mg N
28345.m000111 Ricinus communis 28345.m000111 N
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I
Si032478m.g Setaria italica Si032478m.g I
Si019563m.g Setaria italica Si019563m.g I
Sb04g037590 Sorghum bicolor Sb04g037590 I
Sb02g009930 Sorghum bicolor Sb02g009930 I
TCM_020819 Theobroma cacao TCM_020819 N
TCM_021876 Theobroma cacao TCM_021876 N
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I
TRIUR3_25222 Triticum urartu TRIUR3_25222 I
VIT_06s0004g05260 Vitis vinifera VIT_06s0004g05260 N
GRMZM2G443109 Zea mays GRMZM2G443109 I
GRMZM2G409452 Zea mays GRMZM2G409452 I
GRMZM2G344974 Zea mays GRMZM2G344974 I
GRMZM2G000126 Zea mays GRMZM2G000126 I