HB-1 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 fgenesh2_kg.1__3015__AT1G28420.1 T218450_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.862 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__3015__AT1G28420.1 Homeodomain 41 97

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATWHY2 Arabidopsis lyrata scaffold_202038.1 N 0.000
WHY2 Arabidopsis thaliana AT1G71260 N 0.000
Bostr.10273s0220 Boechera stricta Bostr.10273s0220 N 0.000
PK20247.1 Cannabis sativa PK20247.1 N 0.000
Cagra.0147s0016 Capsella grandiflora Cagra.0147s0016 N 0.000
Carubv10020880m.g Capsella rubella Carubv10020880m.g N 0.000
evm.TU.supercontig_249.9 Carica papaya evm.TU.supercontig_249.9 N 0.000
Eucgr.K01091 Eucalyptus grandis Eucgr.K01091 N 0.000
Thhalv10019058m.g Eutrema salsugineum Thhalv10019058m.g N 0.000
GLYMA03G41270 Glycine max GLYMA03G41270 N 0.000
GLYMA19G43880 Glycine max GLYMA19G43880 N 0.000
MLOC_19666 Hordeum vulgare MLOC_19666 N 0.000
Lus10035067.g Linum usitatissimum Lus10035067.g N 0.000
Lus10017892.g Linum usitatissimum Lus10017892.g N 0.000
chr1.LjT14G19.90.nc Lotus japonicus chr1.LjT14G19.90.nc N 0.000
cassava24783.valid.m1 Manihot esculenta cassava24783.valid.m1 N 0.000
MTR_7g116270 Medicago truncatula MTR_7g116270 N 0.000
mgf015710m Mimulus guttatus mgf015710m N 0.000
ATWHY2 Populus trichocarpa POPTR_0003s04700 N 0.000
Pm022821 Prunus mume Pm022821 N 0.000
PRUPE_ppa011529mg Prunus persica PRUPE_ppa011529mg N 0.000
SapurV1A.0002s0060 Salix purpurea SapurV1A.0002s0060 N 0.000
Solyc11g044750.1 Solanum lycopersicum Solyc11g044750.1 N 0.000
PGSC0003DMG400022930 Solanum tuberosum PGSC0003DMG400022930 N 0.000