HelroG124011 (Helobdella robusta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 HelroG124011 T219336_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.865 0.964
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.865 0.964
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.865 0.964
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.865 0.964
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.865 0.964
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.865 0.964
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.865 0.964
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.865 0.964
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.864 0.945
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.864 0.945
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.864 0.945
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.864 0.945
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.864 0.945
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.864 0.945
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.864 0.945
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.864 0.945
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.864 0.945
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.864 0.945
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.864 0.945
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.864 0.945
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.864 0.945
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.864 0.945
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.864 0.945
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.864 0.945
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.864 0.945
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.864 0.945
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.691
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.691
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.691
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.691
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.691
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.691
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.691
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.691
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.691
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.691
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.636
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HelroP124011 Homeodomain 125 179

Links

Other Homeodomain family TFs
Other Helobdella robusta TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00009p00148470 Amborella trichopoda AMTR_s00009p00148470 I
Bostr.19424s0321 Boechera stricta Bostr.19424s0321 I
evm.TU.supercontig_50.28 Carica papaya evm.TU.supercontig_50.28 I
Ca_12079 Cicer arietinum Ca_12079 I
Cla021852 Citrullus lanatus Cla021852 I
Ciclev10024448m.g Citrus clementina Ciclev10024448m.g N
Ciclev10007133m.g Citrus clementina Ciclev10007133m.g I
orange1.1g041658m.g Citrus sinensis orange1.1g041658m.g N
orange1.1g047241m.g Citrus sinensis orange1.1g047241m.g I
Cucsa.255320 Cucumis sativus Cucsa.255320 I
Cucsa.383680 Cucumis sativus Cucsa.383680 I
Eucgr.H03091 Eucalyptus grandis Eucgr.H03091 I
Eucgr.B01537 Eucalyptus grandis Eucgr.B01537 I
gene11440-v1.0-hybrid Fragaria vesca gene11440-v1.0-hybrid I
GLYMA15G17100 Glycine max GLYMA15G17100 N
GLYMA20G34550 Glycine max GLYMA20G34550 I
GLYMA15G17090 Glycine max GLYMA15G17090 N
GLYMA10G33080 Glycine max GLYMA10G33080 I
GLYMA09G05840 Glycine max GLYMA09G05840 N
GLYMA09G05860 Glycine max GLYMA09G05860 N
GLYMA02G00890 Glycine max GLYMA02G00890 I
GLYMA09G05850 Glycine max GLYMA09G05850 N
Gorai.006G249800 Gossypium raimondii Gorai.006G249800 I
Gorai.005G049200 Gossypium raimondii Gorai.005G049200 I
Gorai.006G249900 Gossypium raimondii Gorai.006G249900 N
Gorai.006G250000 Gossypium raimondii Gorai.006G250000 N
LPERR06G03670 Leersia perrieri LPERR06G03670 N
chr1.CM0295.140.nd Lotus japonicus chr1.CM0295.140.nd I
LjSGA_028626.1 Lotus japonicus LjSGA_028626.1 I
MDP0000880063 Malus domestica MDP0000880063 I
MDP0000789227 Malus domestica MDP0000789227 I
MDP0000187369 Malus domestica MDP0000187369 I
MDP0000155543 Malus domestica MDP0000155543 I
cassava631.valid.m1 Manihot esculenta cassava631.valid.m1 I
cassava38508.m1 Manihot esculenta cassava38508.m1 I
cassava41615.m1 Manihot esculenta cassava41615.m1 I
mgf018792m Mimulus guttatus mgf018792m I
OBART06G03990 Oryza barthii OBART06G03990 N
OBART08G14070 Oryza barthii OBART08G14070 N
ORGLA06G0037100 Oryza glaberrima ORGLA06G0037100 N
OGLUM06G04110 Oryza glumaepatula OGLUM06G04110 N
OGLUM08G14830 Oryza glumaepatula OGLUM08G14830 N
BGIOSGA027003 Oryza indica BGIOSGA027003 N
BGIOSGA022362 Oryza indica BGIOSGA022362 N
OMERI06G04590 Oryza meridionalis OMERI06G04590 N
ONIVA06G20210 Oryza nivara ONIVA06G20210 N
OPUNC06G03800 Oryza punctata OPUNC06G03800 N
ORUFI06G04020 Oryza rufipogon ORUFI06G04020 N
ORUFI08G15950 Oryza rufipogon ORUFI08G15950 N
Pavir.Hb01232 Panicum virgatum Pavir.Hb01232 N
POPTR_0002s04040 Populus trichocarpa POPTR_0002s04040 I
POPTR_0008s16590 Populus trichocarpa POPTR_0008s16590 I
POPTR_0010s08310 Populus trichocarpa POPTR_0010s08310 I
POPTR_0010s08330 Populus trichocarpa POPTR_0010s08330 I
Pm009384 Prunus mume Pm009384 I
PRUPE_ppa013137mg Prunus persica PRUPE_ppa013137mg I
29584.m000237 Ricinus communis 29584.m000237 I
29603.m000510 Ricinus communis 29603.m000510 I
SapurV1A.0006s0870 Salix purpurea SapurV1A.0006s0870 I
SapurV1A.0007s0960 Salix purpurea SapurV1A.0007s0960 I
SapurV1A.0021s1000 Salix purpurea SapurV1A.0021s1000 I
SapurV1A.0292s0020 Salix purpurea SapurV1A.0292s0020 I
Solyc09g089910.1 Solanum lycopersicum Solyc09g089910.1 I
PGSC0003DMG400017233 Solanum tuberosum PGSC0003DMG400017233 I
TCM_020869 Theobroma cacao TCM_020869 I
VIT_07s0005g03210 Vitis vinifera VIT_07s0005g03210 I
VIT_07s0005g03200 Vitis vinifera VIT_07s0005g03200 I
VIT_05s0049g00490 Vitis vinifera VIT_05s0049g00490 I