MTR_2g038000 (Medicago truncatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MTR_2g038000 T220784_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00		 Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02141_2.00 Homeodomain 1 55

DNA Binding Domains

Protein ID Domain From To Sequence
AES65324 Homeodomain 481 535

Links

Other Homeodomain family TFs
Other Medicago truncatula TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.706
PRH Arabidopsis thaliana AT4G29940 I 0.696
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.683
Bo1g014710 Brassica oleracea Bo1g014710 I 0.705
Bo3g175850 Brassica oleracea Bo3g175850 I 0.673
Bra010310 Brassica rapa Bra010310 I 0.673
Bra011153 Brassica rapa Bra011153 I 0.714
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.673
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.673
Ca_08838 Cicer arietinum Ca_08838 I 0.761
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.645
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.683
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.679
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.708
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.703
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.704
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.703
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.630
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.600
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.604
mgf003961m Mimulus guttatus mgf003961m I 0.644
Pm008905 Prunus mume Pm008905 I 0.680
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.680
29671.m000294 Ricinus communis 29671.m000294 I 0.636
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.621
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.621