Alligator_sinensis_CCG013675.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG013675.1 T225239_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pha-2
M02184_2.00 		Caenorhabditis elegans
NNNATNDNNN
NNNHNATNNN		 PBM
Weirauch et al.(2014)
pTH6423 		0.708 0.772
HHEX
M06541_2.00 		Drosophila melanogaster
WYBAATWA
TWATTVRW		 B1H
Mathelier et al.(2014)
MA0183.1 		0.683 0.667
HHEX
M06358_2.00 		Drosophila melanogaster
WYBAATWA
TWATTVRW		 B1H
Zhu et al.(2011)
CG7056_Cell_FBgn0038852 		0.683 0.667
HHEX
M06359_2.00 		Drosophila melanogaster
NYBAATWR
YWATTVRN		 B1H
Zhu et al.(2011)
CG7056_SOLEXA_FBgn0038852 		0.683 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG013675.1 Homeodomain 119 175

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_01414 Cicer arietinum Ca_01414 N 0.000
Ca_05696 Cicer arietinum Ca_05696 N 0.000
gene06460-v1.0-hybrid Fragaria vesca gene06460-v1.0-hybrid N 0.000
GLYMA06G17480 Glycine max GLYMA06G17480 N 0.000
GLYMA08G01280 Glycine max GLYMA08G01280 N 0.000
GLYMA05G38380 Glycine max GLYMA05G38380 N 0.000
Lus10002581.g Linum usitatissimum Lus10002581.g I 0.000
Lus10001809.g Linum usitatissimum Lus10001809.g I 0.000
chr4.CM0175.500.nc Lotus japonicus chr4.CM0175.500.nc N 0.000
MDP0000130686 Malus domestica MDP0000130686 N 0.000
MDP0000147080 Malus domestica MDP0000147080 I 0.000
MTR_8g099750 Medicago truncatula MTR_8g099750 N 0.000
MTR_3g098810 Medicago truncatula MTR_3g098810 N 0.000
Pm024558 Prunus mume Pm024558 N 0.000
PRUPE_ppa027024mg Prunus persica PRUPE_ppa027024mg N 0.000
SapurV1A.1562s0030 Salix purpurea SapurV1A.1562s0030 N 0.000
SapurV1A.1562s0040 Salix purpurea SapurV1A.1562s0040 N 0.000
TCM_014713 Theobroma cacao TCM_014713 I 0.000