cassava1072.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava1072.valid.m1 T227025_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.867 0.982
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.867 0.982
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.861 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.861 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava1072.valid.m1 Homeodomain 20 79

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31774 Aegilops tauschii F775_31774 I
F775_32183 Aegilops tauschii F775_32183 I
AMTR_s00077p00070990 Amborella trichopoda AMTR_s00077p00070990 I
Aquca_004_00525 Aquilegia coerulea Aquca_004_00525 I
Aquca_045_00222 Aquilegia coerulea Aquca_045_00222 I
AtbZIP52 Arabidopsis lyrata Al_scaffold_0001_623 I
fgenesh2_kg.4__2179__AT2G40620.1 Arabidopsis lyrata fgenesh2_kg.4__2179__AT2G40620.1 I
AtbZIP52 Arabidopsis thaliana AT1G06850 D
BZIP18 Arabidopsis thaliana AT2G40620 D
Bostr.25219s0275 Boechera stricta Bostr.25219s0275 I
Bostr.9345s0072 Boechera stricta Bostr.9345s0072 I
BRADI1G63170 Brachypodium distachyon BRADI1G63170 N
Bo4g012700 Brassica oleracea Bo4g012700 I
Bo4g190320 Brassica oleracea Bo4g190320 I
Bo8g007220 Brassica oleracea Bo8g007220 I
Bo8g114410 Brassica oleracea Bo8g114410 I
Bra004582 Brassica rapa Bra004582 I
Bra016980 Brassica rapa Bra016980 I
Bra030663 Brassica rapa Bra030663 I
Bra031541 Brassica rapa Bra031541 I
PK00315.1 Cannabis sativa PK00315.1 D
PK16335.1 Cannabis sativa PK16335.1 D
Cagra.1642s0027 Capsella grandiflora Cagra.1642s0027 I
Cagra.1671s0308 Capsella grandiflora Cagra.1671s0308 I
Carubv10009673m.g Capsella rubella Carubv10009673m.g I
Carubv10025182m.g Capsella rubella Carubv10025182m.g I
evm.TU.supercontig_19.62 Carica papaya evm.TU.supercontig_19.62 I
evm.TU.supercontig_2.298 Carica papaya evm.TU.supercontig_2.298 I
Ca_04108 Cicer arietinum Ca_04108 I
Ca_08929 Cicer arietinum Ca_08929 I
Ca_15657 Cicer arietinum Ca_15657 I
Cla007409 Citrullus lanatus Cla007409 I
Cla013626 Citrullus lanatus Cla013626 I
Ciclev10032076m.g Citrus clementina Ciclev10032076m.g I
orange1.1g020026m.g Citrus sinensis orange1.1g020026m.g I
Cucsa.118900 Cucumis sativus Cucsa.118900 I
Cucsa.143950 Cucumis sativus Cucsa.143950 I
Eucgr.G03135 Eucalyptus grandis Eucgr.G03135 I
Eucgr.J00119 Eucalyptus grandis Eucgr.J00119 I
Thhalv10008146m.g Eutrema salsugineum Thhalv10008146m.g I
Thhalv10016819m.g Eutrema salsugineum Thhalv10016819m.g I
gene21344-v1.0-hybrid Fragaria vesca gene21344-v1.0-hybrid I
gene28103-v1.0-hybrid Fragaria vesca gene28103-v1.0-hybrid I
GLYMA02G40270 Glycine max GLYMA02G40270 I
GLYMA11G30940 Glycine max GLYMA11G30940 I
GLYMA14G38460 Glycine max GLYMA14G38460 I
GLYMA18G05880 Glycine max GLYMA18G05880 I
Gorai.009G293600 Gossypium raimondii Gorai.009G293600 I
Gorai.010G218700 Gossypium raimondii Gorai.010G218700 I
Gorai.011G209200 Gossypium raimondii Gorai.011G209200 I
MLOC_44311 Hordeum vulgare MLOC_44311 I
MLOC_51623 Hordeum vulgare MLOC_51623 I
MLOC_60045 Hordeum vulgare MLOC_60045 I
LPERR03G14390 Leersia perrieri LPERR03G14390 I
Lus10008605.g Linum usitatissimum Lus10008605.g I
Lus10009907.g Linum usitatissimum Lus10009907.g I
Lus10012881.g Linum usitatissimum Lus10012881.g I
Lus10030531.g Linum usitatissimum Lus10030531.g I
Lus10042211.g Linum usitatissimum Lus10042211.g I
LjSGA_023972.1 Lotus japonicus LjSGA_023972.1 I
MDP0000129203 Malus domestica MDP0000129203 I
MDP0000210251 Malus domestica MDP0000210251 I
MDP0000297791 Malus domestica MDP0000297791 I
MDP0000305387 Malus domestica MDP0000305387 I
cassava43674.valid.m1 Manihot esculenta cassava43674.valid.m1 I
MTR_3g094020 Medicago truncatula MTR_3g094020 I
MTR_3g467120 Medicago truncatula MTR_3g467120 I
MTR_5g075390 Medicago truncatula MTR_5g075390 I
mgf007830m Mimulus guttatus mgf007830m I
GSMUA_Achr11G23650_001 Musa acuminata GSMUA_Achr11G23650_001 I
GSMUA_Achr2G18830_001 Musa acuminata GSMUA_Achr2G18830_001 I
GSMUA_Achr5G29650_001 Musa acuminata GSMUA_Achr5G29650_001 I
GSMUA_AchrUn_randomG14020_001 Musa acuminata GSMUA_AchrUn_randomG14020_001 I
OBART07G26390 Oryza barthii OBART07G26390 I
OGLUM07G26420 Oryza glumaepatula OGLUM07G26420 I
BGIOSGA012577 Oryza indica BGIOSGA012577 I
BGIOSGA023710 Oryza indica BGIOSGA023710 I
OMERI03G14760 Oryza meridionalis OMERI03G14760 I
ONIVA03G17500 Oryza nivara ONIVA03G17500 I
ONIVA07G26100 Oryza nivara ONIVA07G26100 I
OPUNC03G15960 Oryza punctata OPUNC03G15960 I
OPUNC07G24840 Oryza punctata OPUNC07G24840 I
ORUFI03G17050 Oryza rufipogon ORUFI03G17050 I
RF2B Oryza sativa OS03G0336200 I
Pavir.Bb03755 Panicum virgatum Pavir.Bb03755 I
Pavir.Ib01574 Panicum virgatum Pavir.Ib01574 I
PDK_20s1367981g001 Phoenix dactylifera PDK_20s1367981g001 I
POPTR_0013s09350 Populus trichocarpa POPTR_0013s09350 I
POPTR_0013s15280 Populus trichocarpa POPTR_0013s15280 I
POPTR_0019s15040 Populus trichocarpa POPTR_0019s15040 I
Pm000251 Prunus mume Pm000251 I
Pm019060 Prunus mume Pm019060 I
PRUPE_ppa006097mg Prunus persica PRUPE_ppa006097mg I
PRUPE_ppa007645mg Prunus persica PRUPE_ppa007645mg I
29729.m002363 Ricinus communis 29729.m002363 I
29804.m001495 Ricinus communis 29804.m001495 I
SapurV1A.0182s0020 Salix purpurea SapurV1A.0182s0020 I
SapurV1A.0215s0230 Salix purpurea SapurV1A.0215s0230 I
SapurV1A.3480s0020 Salix purpurea SapurV1A.3480s0020 I
SapurV1A.4004s0010 Salix purpurea SapurV1A.4004s0010 I
Si030224m.g Setaria italica Si030224m.g I
Si036380m.g Setaria italica Si036380m.g I
Solyc06g048630.2 Solanum lycopersicum Solyc06g048630.2 I
PGSC0003DMG400016651 Solanum tuberosum PGSC0003DMG400016651 I
PGSC0003DMG400027599 Solanum tuberosum PGSC0003DMG400027599 I
TCM_042286 Theobroma cacao TCM_042286 I
TCM_045524 Theobroma cacao TCM_045524 I
Traes_2BS_1B0F27580 Triticum aestivum Traes_2BS_1B0F27580 I
Traes_2DS_93EAEC654 Triticum aestivum Traes_2DS_93EAEC654 I
Traes_4BL_9422485B3 Triticum aestivum Traes_4BL_9422485B3 I
Traes_4DL_19DC0CA31 Triticum aestivum Traes_4DL_19DC0CA31 I
AtbZIP52 Vitis vinifera VIT_06s0004g08070 I
VIT_13s0067g02900 Vitis vinifera VIT_13s0067g02900 I
GRMZM2G062391 Zea mays GRMZM2G062391 I
GRMZM2G151295 Zea mays GRMZM2G151295 I