cassava12117.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava12117.valid.m1 T227028_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.862 0.982
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.862 0.982
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.857 0.893
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.857 0.893
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.857 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava12117.valid.m1 Homeodomain 17 76

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000009090 Ailuropoda melanoleuca ENSAMEG00000009090 I 0.000
ENSP00000300870-D85 Bos grunniens ENSP00000300870-D85 I 0.000
ZNF354A Bos taurus ENSBTAG00000006428 I 0.000
ZNF354A Callithrix jacchus ENSCJAG00000012077 I 0.000
ZNF354B Callithrix jacchus ENSCJAG00000018848 I 0.000
ZNF354A Canis familiaris ENSCAFG00000031000 I 0.000
ZNF354B Canis familiaris ENSCAFG00000029114 I 0.000
ZNF354B Cavia porcellus ENSCPOG00000002227 I 0.000
ENSCSAG00000008583 Chlorocebus sabaeus ENSCSAG00000008583 I 0.000
ENSCSAG00000008589 Chlorocebus sabaeus ENSCSAG00000008589 I 0.000
ZNF354B Dasypus novemcinctus ENSDNOG00000031129 I 0.000
ENSDNOG00000043806 Dasypus novemcinctus ENSDNOG00000043806 I 0.000
Zfp354a Dipodomys ordii ENSDORG00000009396 I 0.000
ZNF354B Equus caballus ENSECAG00000012028 I 0.000
ZNF354A Equus caballus ENSECAG00000012431 I 0.000
ENSEEUG00000008362 Erinaceus europaeus ENSEEUG00000008362 I 0.000
ZNF354A Felis catus ENSFCAG00000023911 I 0.000
ZNF354B Felis catus ENSFCAG00000022066 I 0.000
ZNF354B Gorilla gorilla ENSGGOG00000000628 I 0.000
ZNF354A Gorilla gorilla ENSGGOG00000002534 I 0.000
ZNF354A Homo sapiens ENSG00000169131 D 0.000
ZNF354B Homo sapiens ENSG00000178338 D 0.000
ENSSTOG00000024118 Ictidomys tridecemlineatus ENSSTOG00000024118 I 0.000
ZNF354A Loxodonta africana ENSLAFG00000002909 I 0.000
ENSP00000327143 Macaca fascicularis ENSP00000327143 I 0.000
ZNF354B Macaca mulatta ENSMMUG00000008976 I 0.000
ENSMMUG00000008975 Macaca mulatta ENSMMUG00000008975 I 0.000
ZNF354A Microcebus murinus ENSMICG00000006390 I 0.000
ENSMPUG00000000732 Mustela putorius furo ENSMPUG00000000732 I 0.000
ENSMPUG00000000728 Mustela putorius furo ENSMPUG00000000728 I 0.000
Zfp354b Mus musculus ENSMUSG00000020335 I 0.000
Zfp354a Mus musculus ENSMUSG00000020364 I 0.000
Myotis_brandtii_ZNF354A_10002378 Myotis brandtii Myotis_brandtii_ZNF354A_10002378 I 0.000
ZNF354A Myotis lucifugus ENSMLUG00000013294 I 0.000
ENSNLEG00000001411 Nomascus leucogenys ENSNLEG00000001411 I 0.000
ZNF354A Ochotona princeps ENSOPRG00000017155 I 0.000
ZNF354A Oryctolagus cuniculus ENSOCUG00000029378 I 0.000
ENSOCUG00000029238 Oryctolagus cuniculus ENSOCUG00000029238 I 0.000
ZNF354A Otolemur garnettii ENSOGAG00000024624 I 0.000
ZNF354B Otolemur garnettii ENSOGAG00000027501 I 0.000
ENSOARG00000006794 Ovis aries ENSOARG00000006794 I 0.000
ZNF354A Pan troglodytes ENSPTRG00000017606 I 0.000
ZNF354B Pan troglodytes ENSPTRG00000017609 I 0.000
ENSPANG00000013855 Papio anubis ENSPANG00000013855 I 0.000
ENSPANG00000013252 Papio anubis ENSPANG00000013252 I 0.000
ENSPPYG00000016111 Pongo abelii ENSPPYG00000016111 I 0.000
ENSPPYG00000016113 Pongo abelii ENSPPYG00000016113 I 0.000
ZNF354B Pteropus vampyrus ENSPVAG00000007675 I 0.000
ZNF354A Pteropus vampyrus ENSPVAG00000016750 I 0.000
Zfp354a Rattus norvegicus ENSRNOG00000003634 I 0.000
ZNF354A Tursiops truncatus ENSTTRG00000010631 I 0.000