Cagra.0381s0009 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.0381s0009 T228182_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.681 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0381s0009.1.p Homeodomain 24 80

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATWHY2 Arabidopsis lyrata scaffold_202038.1 N 0.000
WHY2 Arabidopsis thaliana AT1G71260 N 0.000
Bostr.10273s0220 Boechera stricta Bostr.10273s0220 N 0.000
Bra016150 Brassica rapa Bra016150 N 0.000
PK20247.1 Cannabis sativa PK20247.1 N 0.000
Cagra.0147s0016 Capsella grandiflora Cagra.0147s0016 N 0.000
Carubv10020880m.g Capsella rubella Carubv10020880m.g N 0.000
evm.TU.supercontig_249.9 Carica papaya evm.TU.supercontig_249.9 N 0.000
orange1.1g026312m.g Citrus sinensis orange1.1g026312m.g N 0.000
Eucgr.K01091 Eucalyptus grandis Eucgr.K01091 N 0.000
Thhalv10019058m.g Eutrema salsugineum Thhalv10019058m.g N 0.000
GLYMA03G41270 Glycine max GLYMA03G41270 N 0.000
GLYMA19G43880 Glycine max GLYMA19G43880 N 0.000
MLOC_19666 Hordeum vulgare MLOC_19666 N 0.000
Lus10017892.g Linum usitatissimum Lus10017892.g N 0.000
chr1.LjT14G19.90.nc Lotus japonicus chr1.LjT14G19.90.nc N 0.000
MDP0000168614 Malus domestica MDP0000168614 N 0.000
cassava24783.valid.m1 Manihot esculenta cassava24783.valid.m1 N 0.000
MTR_7g116270 Medicago truncatula MTR_7g116270 N 0.000
mgf015710m Mimulus guttatus mgf015710m N 0.000
ATWHY2 Populus trichocarpa POPTR_0003s04700 N 0.000
Pm022821 Prunus mume Pm022821 N 0.000
PRUPE_ppa011529mg Prunus persica PRUPE_ppa011529mg N 0.000
SapurV1A.0002s0060 Salix purpurea SapurV1A.0002s0060 N 0.000
Solyc11g044750.1 Solanum lycopersicum Solyc11g044750.1 N 0.000
PGSC0003DMG400022930 Solanum tuberosum PGSC0003DMG400022930 N 0.000
TCM_035992 Theobroma cacao TCM_035992 N 0.000