Carubv10025876m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10025876m.g T228351_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.815 0.930
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.815 0.930
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.815 0.930
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.810 0.877
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.810 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025876m Homeodomain 23 83

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002034 Ailuropoda melanoleuca ENSAMEG00000002034 I
Alligator_sinensis_CCG019192.1 Alligator sinensis Alligator_sinensis_CCG019192.1 I
MYNN Anolis carolinensis ENSACAG00000015699 I
Afo_R003947 Aptenodytes forsteri Afo_R003947 I
ENSP00000326240-D1 Bos grunniens ENSP00000326240-D1 I
MYNN Callithrix jacchus ENSCJAG00000002629 I
Aan_R012711 Calypte anna Aan_R012711 I
MYNN Canis familiaris ENSCAFG00000014700 I
MYNN Cavia porcellus ENSCPOG00000011640 I
ENSCSAG00000012570 Chlorocebus sabaeus ENSCSAG00000012570 I
MYNN Dasypus novemcinctus ENSDNOG00000004681 I
MYNN Equus caballus ENSECAG00000016427 I
MYNN Felis catus ENSFCAG00000000505 I
ENSFALG00000008628 Ficedula albicollis ENSFALG00000008628 I
MYNN Gallus gallus ENSGALG00000009409 I
Gfo_R004538 Geospiza fortis Gfo_R004538 I
MYNN Gorilla gorilla ENSGGOG00000022638 I
MYNN Homo sapiens ENSG00000085274 D
ENSSTOG00000004642 Ictidomys tridecemlineatus ENSSTOG00000004642 I
ENSLOCG00000007120 Lepisosteus oculatus ENSLOCG00000007120 I
ENSMMUP00000038685 Macaca fascicularis ENSMMUP00000038685 I
MYNN Macaca mulatta ENSMMUG00000021875 I
MYNN Meleagris gallopavo ENSMGAG00000010294 I
MYNN Monodelphis domestica ENSMODG00000016120 I
ENSMPUG00000017089 Mustela putorius furo ENSMPUG00000017089 I
Mynn Mus musculus ENSMUSG00000037730 I
Myotis_brandtii_MYNN_10024775 Myotis brandtii Myotis_brandtii_MYNN_10024775 I
ENSNLEG00000005059 Nomascus leucogenys ENSNLEG00000005059 I
MYNN Ornithorhynchus anatinus ENSOANG00000010325 I
MYNN Oryctolagus cuniculus ENSOCUG00000003252 I
MYNN Otolemur garnettii ENSOGAG00000004734 I
ENSOARG00000000757 Ovis aries ENSOARG00000000757 I
MYNN Pan troglodytes ENSPTRG00000015605 I
ENSPANG00000026081 Papio anubis ENSPANG00000026081 I
ENSPSIG00000004647 Pelodiscus sinensis ENSPSIG00000004647 I
Pvit_09122 Pogona vitticeps Pvit_09122 I
ENSPPYG00000014280 Pongo abelii ENSPPYG00000014280 I
MYNN Procavia capensis ENSPCAG00000015202 I
Mynn Rattus norvegicus ENSRNOG00000027923 I
ENSSHAG00000016096 Sarcophilus harrisii ENSSHAG00000016096 I
MYNN Sus scrofa ENSSSCG00000026829 I
MYNN Taeniopygia guttata ENSTGUG00000010998 I
MYNN Tupaia belangeri ENSTBEG00000007630 I
MYNN Vicugna pacos ENSVPAG00000007981 I
mynn.L Xenopus laevis XB-GENE-941014 I
XP_002931590 Xenopus tropicalis XP_002931590 I