evm.TU.supercontig_545.3 (Carica papaya)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 evm.TU.supercontig_545.3 T228557_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.863 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.863 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.863 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.857 0.911
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.857 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_545.3 Homeodomain 23 82

Links

Other Homeodomain family TFs
Other Carica papaya TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02308 Aegilops tauschii F775_02308 I
F775_02328 Aegilops tauschii F775_02328 I
F775_04075 Aegilops tauschii F775_04075 N
F775_14365 Aegilops tauschii F775_14365 I
F775_16000 Aegilops tauschii F775_16000 I
AMTR_s00003p00252470 Amborella trichopoda AMTR_s00003p00252470 I
AMTR_s00119p00040230 Amborella trichopoda AMTR_s00119p00040230 I
Aquca_027_00052 Aquilegia coerulea Aquca_027_00052 I
Aquca_059_00027 Aquilegia coerulea Aquca_059_00027 I
anac025 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000277 I
NAM Arabidopsis lyrata fgenesh2_kg.1__4366__AT1G52880.1 I
ATNAC2 Arabidopsis lyrata fgenesh2_kg.3__1698__AT3G15510.1 I
NAC018 Arabidopsis thaliana AT1G52880 D
NAC025 Arabidopsis thaliana AT1G61110 D
NAC047 Arabidopsis thaliana AT3G04070 D
NAC056 Arabidopsis thaliana AT3G15510 I
Bostr.0124s0081 Boechera stricta Bostr.0124s0081 I
Bostr.10040s0089 Boechera stricta Bostr.10040s0089 I
Bostr.28625s0148 Boechera stricta Bostr.28625s0148 I
BRADI1G17480 Brachypodium distachyon BRADI1G17480 I
BRADI1G24390 Brachypodium distachyon BRADI1G24390 I
BRADI1G63600 Brachypodium distachyon BRADI1G63600 I
Bo01282s010 Brassica oleracea Bo01282s010 I
Bo1g128420 Brassica oleracea Bo1g128420 I
Bo5g127030 Brassica oleracea Bo5g127030 I
Bo6g030920 Brassica oleracea Bo6g030920 I
Bra001597 Brassica rapa Bra001597 I
Bra018997 Brassica rapa Bra018997 I
Bra021114 Brassica rapa Bra021114 I
Bra027101 Brassica rapa Bra027101 I
Bra027237 Brassica rapa Bra027237 I
PK19059.1 Cannabis sativa PK19059.1 I
Cagra.0946s0024 Capsella grandiflora Cagra.0946s0024 I
Cagra.2213s0001 Capsella grandiflora Cagra.2213s0001 I
Carubv10009524m.g Capsella rubella Carubv10009524m.g I
Carubv10014008m.g Capsella rubella Carubv10014008m.g I
Carubv10021371m.g Capsella rubella Carubv10021371m.g I
evm.TU.supercontig_27.81 Carica papaya evm.TU.supercontig_27.81 I
evm.TU.supercontig_80.94 Carica papaya evm.TU.supercontig_80.94 I
Ca_06901 Cicer arietinum Ca_06901 I
Ca_19654 Cicer arietinum Ca_19654 I
Cla011948 Citrullus lanatus Cla011948 I
Cla023771 Citrullus lanatus Cla023771 I
Ciclev10008628m.g Citrus clementina Ciclev10008628m.g I
Ciclev10015688m.g Citrus clementina Ciclev10015688m.g I
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I
orange1.1g016791m.g Citrus sinensis orange1.1g016791m.g I
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I
orange1.1g017854m.g Citrus sinensis orange1.1g017854m.g I
Cucsa.074600 Cucumis sativus Cucsa.074600 I
Cucsa.341790 Cucumis sativus Cucsa.341790 I
Eucgr.B02485 Eucalyptus grandis Eucgr.B02485 I
Eucgr.F01091 Eucalyptus grandis Eucgr.F01091 I
Thhalv10012308m.g Eutrema salsugineum Thhalv10012308m.g I
Thhalv10022353m.g Eutrema salsugineum Thhalv10022353m.g I
Thhalv10023591m.g Eutrema salsugineum Thhalv10023591m.g I
gene30439-v1.0-hybrid Fragaria vesca gene30439-v1.0-hybrid I
gene31150-v1.0-hybrid Fragaria vesca gene31150-v1.0-hybrid I
GLYMA06G38440 Glycine max GLYMA06G38440 I
GLYMA07G31220 Glycine max GLYMA07G31220 I
GLYMA12G22790 Glycine max GLYMA12G22790 I
GLYMA13G31660 Glycine max GLYMA13G31660 I
GLYMA13G35560 Glycine max GLYMA13G35560 I
GLYMA15G07620 Glycine max GLYMA15G07620 I
Gorai.002G073800 Gossypium raimondii Gorai.002G073800 I
Gorai.007G267900 Gossypium raimondii Gorai.007G267900 I
Gorai.009G170700 Gossypium raimondii Gorai.009G170700 I
Gorai.009G433100 Gossypium raimondii Gorai.009G433100 I
Gorai.013G167100 Gossypium raimondii Gorai.013G167100 I
MLOC_8116 Hordeum vulgare MLOC_8116 I
LPERR03G13950 Leersia perrieri LPERR03G13950 I
LPERR07G16320 Leersia perrieri LPERR07G16320 I
LPERR07G23420 Leersia perrieri LPERR07G23420 N
Lus10006547.g Linum usitatissimum Lus10006547.g I
Lus10011215.g Linum usitatissimum Lus10011215.g I
Lus10015076.g Linum usitatissimum Lus10015076.g N
Lus10018469.g Linum usitatissimum Lus10018469.g I
Lus10023179.g Linum usitatissimum Lus10023179.g N
Lus10032657.g Linum usitatissimum Lus10032657.g I
Lus10042531.g Linum usitatissimum Lus10042531.g I
Lus10043095.g Linum usitatissimum Lus10043095.g I
LjSGA_023894.2 Lotus japonicus LjSGA_023894.2 I
MDP0000120881 Malus domestica MDP0000120881 I
MDP0000173636 Malus domestica MDP0000173636 I
MDP0000674514 Malus domestica MDP0000674514 I
MDP0000868419 Malus domestica MDP0000868419 I
cassava26728.m1 Manihot esculenta cassava26728.m1 I
cassava35701.valid.m1 Manihot esculenta cassava35701.valid.m1 I
cassava42314.valid.m1 Manihot esculenta cassava42314.valid.m1 I
cassava5169.m1 Manihot esculenta cassava5169.m1 I
MTR_2157s0010 Medicago truncatula MTR_2157s0010 I
MTR_2g080010 Medicago truncatula MTR_2g080010 I
MTR_4g089135 Medicago truncatula MTR_4g089135 I
mgf025001m Mimulus guttatus mgf025001m I
GSMUA_Achr1G08860_001 Musa acuminata GSMUA_Achr1G08860_001 I
GSMUA_Achr3G18010_001 Musa acuminata GSMUA_Achr3G18010_001 I
GSMUA_Achr4G02380_001 Musa acuminata GSMUA_Achr4G02380_001 I
GSMUA_Achr4G10310_001 Musa acuminata GSMUA_Achr4G10310_001 I
GSMUA_Achr6G17720_001 Musa acuminata GSMUA_Achr6G17720_001 I
GSMUA_Achr6G32320_001 Musa acuminata GSMUA_Achr6G32320_001 I
GSMUA_Achr7G21770_001 Musa acuminata GSMUA_Achr7G21770_001 I
GSMUA_Achr9G19520_001 Musa acuminata GSMUA_Achr9G19520_001 I
GSMUA_AchrUn_randomG17360_001 Musa acuminata GSMUA_AchrUn_randomG17360_001 I
OBART03G15960 Oryza barthii OBART03G15960 I
OBART07G19010 Oryza barthii OBART07G19010 I
OBART07G26600 Oryza barthii OBART07G26600 I
OB03G25680 Oryza brachyantha OB03G25680 I
OB05G24480 Oryza brachyantha OB05G24480 I
OB07G24770 Oryza brachyantha OB07G24770 I
OB07G32110 Oryza brachyantha OB07G32110 I
ORGLA03G0152700 Oryza glaberrima ORGLA03G0152700 I
ORGLA07G0209600 Oryza glaberrima ORGLA07G0209600 I
ORGLA07G0243600 Oryza glaberrima ORGLA07G0243600 I
OGLUM03G16100 Oryza glumaepatula OGLUM03G16100 I
OGLUM07G18780 Oryza glumaepatula OGLUM07G18780 I
OGLUM07G26630 Oryza glumaepatula OGLUM07G26630 I
OGLUM07G26640 Oryza glumaepatula OGLUM07G26640 I
ONAC010 Oryza indica BGIOSGA024071 I
BGIOSGA026407 Oryza indica BGIOSGA026407 I
OLONG_002265 Oryza longistaminata OLONG_002265 I
OLONG_005610 Oryza longistaminata OLONG_005610 I
OLONG_012944 Oryza longistaminata OLONG_012944 I
OMERI03G14270 Oryza meridionalis OMERI03G14270 I
OMERI07G15720 Oryza meridionalis OMERI07G15720 I
OMERI07G23240 Oryza meridionalis OMERI07G23240 I
ONIVA03G16920 Oryza nivara ONIVA03G16920 I
ONIVA07G17340 Oryza nivara ONIVA07G17340 I
ONIVA07G26310 Oryza nivara ONIVA07G26310 I
OPUNC03G15460 Oryza punctata OPUNC03G15460 I
OPUNC07G17890 Oryza punctata OPUNC07G17890 I
OPUNC07G25060 Oryza punctata OPUNC07G25060 I
ORUFI03G16510 Oryza rufipogon ORUFI03G16510 I
ORUFI07G19770 Oryza rufipogon ORUFI07G19770 I
ORUFI07G27590 Oryza rufipogon ORUFI07G27590 I
OS03G0327800 Oryza sativa OS03G0327800 I
ONAC010 Oryza sativa OS07G0566500 I
Pavir.Ba00642 Panicum virgatum Pavir.Ba00642 I
Pavir.Bb03737 Panicum virgatum Pavir.Bb03737 I
Pavir.Ea00837 Panicum virgatum Pavir.Ea00837 I
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I
Pavir.J08552 Panicum virgatum Pavir.J08552 I
Pavir.J22666 Panicum virgatum Pavir.J22666 I
Pavir.J23256 Panicum virgatum Pavir.J23256 I
POPTR_0004s03820 Populus trichocarpa POPTR_0004s03820 I
POPTR_0013s05080 Populus trichocarpa POPTR_0013s05080 I
Pm009955 Prunus mume Pm009955 I
PRUPE_ppa007314mg Prunus persica PRUPE_ppa007314mg I
27961.m000091 Ricinus communis 27961.m000091 I
29851.m002359 Ricinus communis 29851.m002359 I
30078.m002348 Ricinus communis 30078.m002348 I
SapurV1A.0044s0420 Salix purpurea SapurV1A.0044s0420 I
SapurV1A.1058s0080 Salix purpurea SapurV1A.1058s0080 I
SapurV1A.2115s0010 Salix purpurea SapurV1A.2115s0010 I
SELMODRAFT_133982 Selaginella moellendorffii SELMODRAFT_133982 I
SELMODRAFT_47266 Selaginella moellendorffii SELMODRAFT_47266 I
Si030267m.g Setaria italica Si030267m.g I
Si032676m.g Setaria italica Si032676m.g I
Si036303m.g Setaria italica Si036303m.g I
Solyc07g063420.2 Solanum lycopersicum Solyc07g063420.2 I
PGSC0003DMG400019293 Solanum tuberosum PGSC0003DMG400019293 I
Sb01g036560 Sorghum bicolor Sb01g036560 I
Sb02g036620 Sorghum bicolor Sb02g036620 I
Sb02g043210 Sorghum bicolor Sb02g043210 I
TCM_026030 Theobroma cacao TCM_026030 I
TCM_029931 Theobroma cacao TCM_029931 I
TCM_031363 Theobroma cacao TCM_031363 I
Traes_2AS_09457EDD8 Triticum aestivum Traes_2AS_09457EDD8 I
Traes_2BS_58AA829F4 Triticum aestivum Traes_2BS_58AA829F4 I
Traes_2BS_924D34AA1 Triticum aestivum Traes_2BS_924D34AA1 I
Traes_2BS_C116E5668 Triticum aestivum Traes_2BS_C116E5668 I
Traes_2DS_5DF921ABB Triticum aestivum Traes_2DS_5DF921ABB I
Traes_2DS_85FE89BC5 Triticum aestivum Traes_2DS_85FE89BC5 N
Traes_2DS_F5B34D422 Triticum aestivum Traes_2DS_F5B34D422 N
TRAES3BF108700110CFD_g Triticum aestivum TRAES3BF108700110CFD_g I
Traes_4AS_DBDA5E9C6 Triticum aestivum Traes_4AS_DBDA5E9C6 I
Traes_4DL_F0BE36C9D Triticum aestivum Traes_4DL_F0BE36C9D I
Traes_6AS_6F89CC969 Triticum aestivum Traes_6AS_6F89CC969 I
Traes_6DS_90A627C3F Triticum aestivum Traes_6DS_90A627C3F I
TRIUR3_29857 Triticum urartu TRIUR3_29857 I
TRIUR3_32458 Triticum urartu TRIUR3_32458 N
anac025 Vitis vinifera VIT_00s0375g00040 I
VIT_08s0040g02110 Vitis vinifera VIT_08s0040g02110 I
VIT_19s0014g03300 Vitis vinifera VIT_19s0014g03300 I
GRMZM2G011598 Zea mays GRMZM2G011598 I
GRMZM2G042494 Zea mays GRMZM2G042494 I
GRMZM2G109627 Zea mays GRMZM2G109627 I
GRMZM2G179885 Zea mays GRMZM2G179885 I
GRMZM2G430849 Zea mays GRMZM2G430849 I