Gorai.009G109300 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.009G109300 T228770_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.822 0.660
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.553
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G109300.1 Homeodomain 594 643
Gorai.009G109300.2 Homeodomain 594 643
Gorai.009G109300.3 Homeodomain 115 167

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra012244 Brassica rapa Bra012244 N 0.000
Bra016455 Brassica rapa Bra016455 N 0.000
CaO19.1730 Candida albicans CaO19.1730 N 0.000
CaO19.9298 Candida albicans CaO19.9298 N 0.000
DAPPUDRAFT_346928 Daphnia pulex DAPPUDRAFT_346928 N 0.000
Hbp1 Dipodomys ordii ENSDORG00000010576 I 0.000
GH23191 Drosophila grimshawi FBgn0130648 N 0.000
HBP1 Echinops telfairi ENSETEG00000018542 I 0.000
e_gw1.88.21.1 Fragilariopsis cylindrus e_gw1.88.21.1 N 0.000
ENSGMOG00000014613 Gadus morhua ENSGMOG00000014613 N 0.000
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.000
GLYMA02G25940 Glycine max GLYMA02G25940 N 0.000
HBP1 Homo sapiens ENSG00000105856 D 0.000
ENSMEUG00000011116 Macropus eugenii ENSMEUG00000011116 I 0.000
Hbp1 Mus musculus ENSMUSG00000002996 D 0.000
Ocbimv22007316m.g Octopus bimaculoides Ocbimv22007316m.g N 0.000
Ogr19131 Ophisaurus gracilis Ogr19131 N 0.000
SOX11 Ornithorhynchus anatinus ENSOANG00000006361 N 0.000
ENSORLG00000018700 Oryzias latipes ENSORLG00000018700 N 0.000
PredSwiss_ASS2010_3146.2 Pneumocystis carinii PredSwiss_ASS2010_3146.2 N 0.000
PPA10381 Pristionchus pacificus PPA10381 N 0.000
PXEA_0001829801 Protopolystoma xenopodis PXEA_0001829801 N 0.000
RO3G_05566 Rhizopus oryzae RO3G_05566 N 0.000
Sjc_0095610 Schistosoma japonicum Sjc_0095610 N 0.000
SPOG_05006 Schizosaccharomyces cryophilus SPOG_05006 N 0.000
HBP1 Sorex araneus ENSSARG00000007731 I 0.000
ENSTNIG00000019242 Tetraodon nigroviridis ENSTNIG00000019242 N 0.000
ENSTNIG00000011238 Tetraodon nigroviridis ENSTNIG00000011238 N 0.000
H101_08199 Trichophyton interdigitale H101_08199 N 0.000