Lus10038449.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10038449.g T228940_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-9
M06898_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH

DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
PHV_col_a
0.802 0.912
ATHB-9
M02682_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS

SVRHGYAATCATTACDDND
SELEX
Mathelier et al.(2014)
MA0573.1
0.802 0.912
ATHB-9
M10623_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS

SVRHGYAATCATTACDDND
Transfac
Matys et al.(2006)
P$ATHB9_01
0.802 0.912
ATHB-15
M00864_2.00
Arabidopsis thaliana
AATAATTACT

AGTAATTATT
PBM
Franco-Zorrilla et al.(2014)
ICU4
0.797 0.860
ATHB-15
M06899_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH

DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
ATHB15_col_a
0.797 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10038449 Homeodomain 40 100

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
DREB19 Arabidopsis lyrata fgenesh2_kg.4__1905__AT2G38340.1 I
Bostr.23794s0238 Boechera stricta Bostr.23794s0238 I
Bo4g027470 Brassica oleracea Bo4g027470 I
Cagra.5557s0006 Capsella grandiflora Cagra.5557s0006 I
Carubv10024477m.g Capsella rubella Carubv10024477m.g I
Thhalv10017658m.g Eutrema salsugineum Thhalv10017658m.g I