CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10038449.g
(
Linum usitatissimum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Lus10038449.g
T228940_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-9
M06898_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
PHV_col_a
0.802
0.912
ATHB-9
M02682_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND
SELEX
Mathelier et al.(2014)
MA0573.1
0.802
0.912
ATHB-9
M10623_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND
Transfac
Matys et al.(2006)
P$ATHB9_01
0.802
0.912
ATHB-15
M00864_2.00
Arabidopsis thaliana
AATAATTACT
AGTAATTATT
PBM
Franco-Zorrilla et al.(2014)
ICU4
0.797
0.860
ATHB-15
M06899_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
ATHB15_col_a
0.797
0.860
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10038449
Homeodomain
40
100
TSKYVRYTPEQVEALERVYAECPKPTSLKRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ
Links
Other
Homeodomain
family TFs
Other
Linum usitatissimum
TFs
335 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
DREB19
Arabidopsis lyrata
fgenesh2_kg.4__1905__AT2G38340.1
I
Bostr.23794s0238
Boechera stricta
Bostr.23794s0238
I
Bo4g027470
Brassica oleracea
Bo4g027470
I
Cagra.5557s0006
Capsella grandiflora
Cagra.5557s0006
I
Carubv10024477m.g
Capsella rubella
Carubv10024477m.g
I
Thhalv10017658m.g
Eutrema salsugineum
Thhalv10017658m.g
I