Carubv10024477m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10024477m.g T007921_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2E
M06609_2.00 		Arabidopsis thaliana
NNNHNHMACCGMCWTWD
HWAWGKCGGTKDNDNNN		 Dap-seq
OMalley et al.(2016)
DREB19_col_a 		0.821 0.962
DREB2E
M06610_2.00 		Arabidopsis thaliana
HNHMACCGACWTWD
HWAWGTCGGTKDND		 Dap-seq
OMalley et al.(2016)
DREB19_colamp_a 		0.821 0.962
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024477m AP2 72 131

Links

Other AP2 family TFs
Other Capsella rubella TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.23794s0238 Boechera stricta Bostr.23794s0238 I 0.828
Cagra.5557s0006 Capsella grandiflora Cagra.5557s0006 I 0.828
DREB2E Arabidopsis thaliana AT2G38340 D 0.821
DREB19 Arabidopsis lyrata fgenesh2_kg.4__1905__AT2G38340.1 I 0.821
Thhalv10017658m.g Eutrema salsugineum Thhalv10017658m.g I 0.756
Bo4g027470 Brassica oleracea Bo4g027470 I 0.688