21608_YPL177C (Saccharomyces mikatae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 21608_YPL177C T230773_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUP9
M00059_2.00 		Saccharomyces cerevisiae
TGACABHW
WDVTGTCA		 PBM
Badis et al.(2008)
CUP9_4508 		0.867 1.000
CUP9
M01553_2.00 		Saccharomyces cerevisiae
NWGACAYWWH
DWWRTGTCWN		 PBM
Zhu et al.(2009)
Cup9 		0.867 1.000
CUP9
M07488_2.00 		Saccharomyces cerevisiae
TGACAYAWW
WWTRTGTCA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0288.1 		0.867 1.000
CUP9
M08576_2.00 		Saccharomyces cerevisiae
TGACAYAWW
WWTRTGTCA		 Misc
DeBoer et al.(2011)
YPL177C_480 		0.867 1.000
TOS8
M02192_2.00 		Saccharomyces cerevisiae
NNNTKACGTMW
WKACGTMANNN		 PBM
Weirauch et al.(2014)
pTH5696 		0.804 0.800
TOS8
M00057_2.00 		Saccharomyces cerevisiae
NNNCRYGNNN
NNNCRYGNNN		 PBM
Badis et al.(2008)
TOS8_2100 		0.804 0.800
TOS8
M07486_2.00 		Saccharomyces cerevisiae
NWTGACAB
VTGTCAWN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0408.1 		0.804 0.800
TOS8
M08574_2.00 		Saccharomyces cerevisiae
NWTGACAB
VTGTCAWN		 Misc
DeBoer et al.(2011)
YGL096W_494 		0.804 0.800
CAGL0H02959g
M02060_2.00 		Candida glabrata
NDTDACRBNN
NNVYGTHAHN		 PBM
Weirauch et al.(2014)
pTH6455 		0.642 0.800
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
21608_YPL177C Homeodomain 151 208

Links

Other Homeodomain family TFs
Other Saccharomyces mikatae TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD21 Arabidopsis lyrata fgenesh2_kg.3__1152__AT3G11090.1 N 0.000
LBD21 Arabidopsis thaliana AT3G11090 N 0.000
Bostr.19424s1045 Boechera stricta Bostr.19424s1045 N 0.000
Bo5g136860 Brassica oleracea Bo5g136860 N 0.000
Bra034867 Brassica rapa Bra034867 N 0.000
Cagra.1655s0059 Capsella grandiflora Cagra.1655s0059 N 0.000
Carubv10015898m.g Capsella rubella Carubv10015898m.g N 0.000
evm.TU.supercontig_19.151 Carica papaya evm.TU.supercontig_19.151 N 0.000
Ca_12464 Cicer arietinum Ca_12464 N 0.000
Ciclev10032862m.g Citrus clementina Ciclev10032862m.g N 0.000
orange1.1g036565m.g Citrus sinensis orange1.1g036565m.g N 0.000
Cucsa.136740 Cucumis sativus Cucsa.136740 N 0.000
Eucgr.G03078 Eucalyptus grandis Eucgr.G03078 N 0.000
Thhalv10021674m.g Eutrema salsugineum Thhalv10021674m.g N 0.000
gene21008-v1.0-hybrid Fragaria vesca gene21008-v1.0-hybrid N 0.000
GLYMA02G43220 Glycine max GLYMA02G43220 N 0.000
GLYMA11G35500 Glycine max GLYMA11G35500 N 0.000
GLYMA14G06270 Glycine max GLYMA14G06270 N 0.000
GLYMA18G02910 Glycine max GLYMA18G02910 N 0.000
Gorai.013G016900 Gossypium raimondii Gorai.013G016900 N 0.000
Gorai.011G291500 Gossypium raimondii Gorai.011G291500 N 0.000
Lus10028986.g Linum usitatissimum Lus10028986.g N 0.000
MDP0000943252 Malus domestica MDP0000943252 N 0.000
MDP0000220708 Malus domestica MDP0000220708 N 0.000
cassava20837.m1 Manihot esculenta cassava20837.m1 N 0.000
cassava41267.m1 Manihot esculenta cassava41267.m1 N 0.000
MTR_3g071420 Medicago truncatula MTR_3g071420 N 0.000
MTR_5g083010 Medicago truncatula MTR_5g083010 N 0.000
mgf019866m Mimulus guttatus mgf019866m N 0.000
POPTR_0008s07150 Populus trichocarpa POPTR_0008s07150 N 0.000
POPTR_0010s19340 Populus trichocarpa POPTR_0010s19340 N 0.000
Pm018957 Prunus mume Pm018957 N 0.000
PRUPE_ppa012284mg Prunus persica PRUPE_ppa012284mg N 0.000
29814.m000742 Ricinus communis 29814.m000742 N 0.000
SapurV1A.0061s0510 Salix purpurea SapurV1A.0061s0510 N 0.000
SapurV1A.0650s0120 Salix purpurea SapurV1A.0650s0120 N 0.000
Solyc03g095940.1 Solanum lycopersicum Solyc03g095940.1 N 0.000
PGSC0003DMG400027718 Solanum tuberosum PGSC0003DMG400027718 N 0.000
TCM_042466 Theobroma cacao TCM_042466 N 0.000
LBD21 Vitis vinifera VIT_13s0067g01450 N 0.000