LjSGA_015479.1 (Lotus japonicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 LjSGA_015479.1 T230889_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.824 0.807
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.796 0.860
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.796 0.860
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.794 0.807
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.794 0.807
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.794 0.807
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.777 0.702
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.777 0.702
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.762 0.842
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.762 0.842
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.762 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_015479.1 Homeodomain 185 241

Links

Other Homeodomain family TFs
Other Lotus japonicus TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw.260.84.1 Branchiostoma floridae gw.260.84.1 I
e_gw.260.37.1 Branchiostoma floridae e_gw.260.37.1 I
e_gw.260.36.1 Branchiostoma floridae e_gw.260.36.1 I
hox10 Ciona intestinalis ENSCING00000001031 I
hox12 Ciona intestinalis ENSCING00000007040 D
ENSCSAVG00000008685 Ciona savignyi ENSCSAVG00000008685 I
ENSCSAVG00000003530 Ciona savignyi ENSCSAVG00000003530 I
csin103306 Clonorchis sinensis csin103306 I
CGI_10027385 Crassostrea gigas CGI_10027385 N
ENSFALG00000014896 Ficedula albicollis ENSFALG00000014896 I
GPLIN_000726000 Globodera pallida GPLIN_000726000 I
LotgiG100031 Lottia gigantea LotgiG100031 N
ENSNLEG00000017680 Nomascus leucogenys ENSNLEG00000017680 I
Ocbimv22015181m.g Octopus bimaculoides Ocbimv22015181m.g N
SNAPOd2T00003836001 Oikopleura dioica SNAPOd2T00003836001 I
SNAPOd2T00025381001 Oikopleura dioica SNAPOd2T00025381001 I
Ogr12572 Ophisaurus gracilis Ogr12572 I
T265_10106 Opisthorchis viverrini T265_10106 I
PTRK_0000303300 Parastrongyloides trichosuri PTRK_0000303300 I
ENSPMAG00000010089 Petromyzon marinus ENSPMAG00000010089 I
RSKR_0000904600 Rhabditophanes kr3021 RSKR_0000904600 I
Sakowv30000860m.g Saccoglossus kowalevskii Sakowv30000860m.g I
Sakowv30025348m.g Saccoglossus kowalevskii Sakowv30025348m.g I
SMU15029209 Schmidtea mediterranea SMU15029209 I
SPU_002631 Strongylocentrotus purpuratus SPU_002631 I
SPU_000388 Strongylocentrotus purpuratus SPU_000388 I
VSX2 Sus scrofa ENSSSCG00000002363 I
TRE_0000208301 Trichobilharzia regenti TRE_0000208301 I