SROB_0000484201 (Schistosoma rodhaini)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SROB_0000484201 T236388_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nkx2-2
M00438_2.00 		Mus musculus
NNNRAGDRN
NYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-2_2823 		0.702 0.754
Nkx2-2
M09190_2.00 		Mus musculus
NTBRAGWGBBN
NVVCWCTYVAN		 Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A 		0.702 0.754
NKX2-2
M10681_2.00 		Homo sapiens
WTAAGTRBTT
AAVYACTTAW		 Transfac
Matys et al.(2006)
V$NKX22_01 		0.702 0.754
NKX2-2
M10682_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3_01 		0.702 0.754
NKX2-2
M10683_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3 		0.702 0.754
Nkx2-9
M00520_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-9_3082 		0.692 0.754
Nkx2-9
M00800_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Weirauch et al.(2013)
pTH2842 		0.692 0.754
Nkx2-9
M09215_2.00 		Mus musculus
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C 		0.692 0.754
vnd
M06551_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Mathelier et al.(2014)
MA0253.1 		0.686 0.719
vnd
M06377_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986 		0.686 0.719
vnd
M06378_2.00 		Drosophila melanogaster
KYTSAAGWGY
RCWCTTSARM		 B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986 		0.686 0.719
vnd
M06379_2.00 		Drosophila melanogaster
BTBAAGTR
YACTTVAV		 B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986 		0.686 0.719
vnd
M09683_2.00 		Drosophila melanogaster
TCAAGTGB
VCACTTGA		 Misc
Kulakovskiy et al.(2009)
vnd 		0.686 0.719
NKX2-8
M00302_2.00 		Homo sapiens
NNRAGDRB
VYHCTYNN		 PBM
Barrera et al.(2016)
NKX2-8_REF 		0.660 0.719
NKX2-8
M05149_2.00 		Homo sapiens
BTSRAGTGBN
NVCACTYSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_HT-SELEX 		0.660 0.719
NKX2-8
M09145_2.00 		Homo sapiens
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_HUMAN.H11MO.0.C 		0.660 0.719
NKX2-8
M00301_2.00 		Homo sapiens
NNRAKDRB
VYHMTYNN		 PBM
Barrera et al.(2016)
NKX2-8_A94T 		0.660 0.719
NKX2-8
M05150_2.00 		Homo sapiens
GCARTAACGACATC
GATGTCGTTAYTGC		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_1 		0.660 0.719
NKX2-8
M05151_2.00 		Homo sapiens
BTSAAGTGBN
NVCACTTSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_2 		0.660 0.719
NKX2-8
M05152_2.00 		Homo sapiens
BTBAACGAB
VTCGTTVAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_3 		0.660 0.719
ceh-22
M00376_2.00 		Caenorhabditis elegans
WBRAGTRBNN
NNVYACTYVW		 PBM
Berger et al.(2006)
Ceh-22 		0.659 0.667
Nkx2-1
M00385_2.00 		Mus musculus
NNRAGDRN
NYHCTYNN		 PBM
Berger et al.(2008)
Titf1_1722 		0.648 0.702
Nkx2-4
M00514_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-4_3074 		0.648 0.702
NKX2-1
M09146_2.00 		Homo sapiens
BTKGAGWGBN
NVCWCTCMAV		 Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A 		0.648 0.702
Nkx2-1
M09171_2.00 		Mus musculus
NBTKGAGWGB
VCWCTCMAVN		 Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A 		0.648 0.702
Nkx2-1
M09563_2.00 		Mus musculus
BTBRAGWGBH
DVCWCTYVAV		 Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252 		0.648 0.702
NKX2-1
M10694_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TITF1_Q3 		0.648 0.702
NKX2-1
M10695_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5_01 		0.648 0.702
NKX2-1
M10696_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5 		0.648 0.702
NKX2-1
M10697_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q6 		0.648 0.702
scro
M03854_2.00 		Drosophila melanogaster
NNBRMGTGB
VCACKYVNN		 SELEX
Nitta et al.(2015)
scro_1 		0.637 0.684
ceh-24
M02181_2.00 		Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN		 PBM
Weirauch et al.(2014)
pTH6327 		0.632 0.667
Nkx2-3
M00497_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-3_3435 		0.604 0.667
NKX2-3
M05042_2.00 		Homo sapiens
NNBAAGTGBN
NVCACTTVNN		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX 		0.604 0.667
NKX2-3
M05045_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX 		0.604 0.667
NKX2-3
M05043_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1 		0.604 0.667
NKX2-3
M05044_2.00 		Homo sapiens
SDYAACGHB
VDCGTTRHS		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2 		0.604 0.667
NKX2-3
M05046_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1 		0.604 0.667
NKX2-3
M05047_2.00 		Homo sapiens
SWYAACSHB
VDSGTTRWS		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2 		0.604 0.667
NKX2-5
M00323_2.00 		Homo sapiens
NWYAAGTGSNN
NNSCACTTRWN		 PBM
Barrera et al.(2016)
NKX2-5_REF 		0.604 0.632
Nkx2-5
M00404_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-5_3436 		0.604 0.632
NKX2-5
M05346_2.00 		Homo sapiens
BHYAAGTGBN
NVCACTTRDV		 SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX 		0.604 0.632
Nkx2-5
M02686_2.00 		Mus musculus
WTAAKWK
MWMTTAW		 SELEX
Mathelier et al.(2014)
MA0063.1 		0.604 0.632
Nkx2-5
M08136_2.00 		Mus musculus
SYTGAGWGSYH
DRSCWCTCARS		 ChIP-seq
Mathelier et al.(2014)
MA0503.1 		0.604 0.632
NKX2-5
M09163_2.00 		Homo sapiens
BKRAGWGV
BCWCTYMV		 Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B 		0.604 0.632
Nkx2-5
M09177_2.00 		Mus musculus
NBYBRAGTGS
SCACTYVRVN		 Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A 		0.604 0.632
Nkx2-5
M09567_2.00 		Mus musculus
HBRAGWGBNN
NNVCWCTYVD		 Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529 		0.604 0.632
NKX2-5
M10742_2.00 		Homo sapiens
TYAAGTG
CACTTRA		 Transfac
Matys et al.(2006)
V$NKX25_01 		0.604 0.632
NKX2-5
M10743_2.00 		Homo sapiens
CWTAATTV
BAATTAWG		 Transfac
Matys et al.(2006)
V$NKX25_02 		0.604 0.632
NKX2-5
M10744_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q5 		0.604 0.632
NKX2-5
M10745_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q6 		0.604 0.632
NKX2-5
M05347_2.00 		Homo sapiens
BTYAAGTGGN
NCCACTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1 		0.604 0.632
NKX2-5
M05348_2.00 		Homo sapiens
BTYAACGAB
VTCGTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2 		0.604 0.632
NKX2-5
M00322_2.00 		Homo sapiens
NNNRNNN
NNNYNNN		 PBM
Barrera et al.(2016)
NKX2-5_R190C 		0.604 0.614
NKX2-5
M00324_2.00 		Homo sapiens
NHNNNNN
NNNNNDN		 PBM
Barrera et al.(2016)
NKX2-5_T178M 		0.604 0.614
ceh-28
M08210_2.00 		Caenorhabditis elegans
AATCGATW
WATCGATT		 ChIP-seq
Contrino et al.(2012)
Mw138 		0.604 0.649
NKX2-5
M00321_2.00 		Homo sapiens
HNAAGTRBNN
NNVYACTTND		 PBM
Barrera et al.(2016)
NKX2-5_R161P 		0.599 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0000484201-mRNA-1 Homeodomain 212 268

Links

Other Homeodomain family TFs
Other Schistosoma rodhaini TFs

775 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI066036 Acyrthosiphon pisum ACYPI066036 I
ACYPI48166 Acyrthosiphon pisum ACYPI48166 I
ACYPI56791 Acyrthosiphon pisum ACYPI56791 I
AAEL011231 Aedes aegypti AAEL011231 I
AALB007603 Anopheles albimanus AALB007603 I
AARA005929 Anopheles arabiensis AARA005929 I
AATE013762 Anopheles atroparvus AATE013762 I
ACUA011505 Anopheles culicifacies ACUA011505 I
ADIR005732 Anopheles dirus ADIR005732 I
AEPI004043 Anopheles epiroticus AEPI004043 I
AFAF014433 Anopheles farauti AFAF014433 I
AFUN003486 Anopheles funestus AFUN003486 I
AGAP028221 Anopheles gambiae AGAP028221 I
AGAP010438 Anopheles gambiae AGAP010438 D
AMEM014965 Anopheles merus AMEM014965 I
AMIN004996 Anopheles minimus AMIN004996 I
AQUA005997 Anopheles quadriannulatus AQUA005997 I
ASIS019127 Anopheles sinensis ASIS019127 I
GB52331 Apis mellifera GB52331 I
GB51231 Apis mellifera GB51231 I
GB48727 Apis mellifera GB48727 I
ACEP12797 Atta cephalotes ACEP12797 I
ACEP13260 Atta cephalotes ACEP13260 I
Cflo_03607--XP_395932.2_APIME Camponotus floridanus Cflo_03607--XP_395932.2_APIME I
Cflo_03603--XP_001120531.1_APIME Camponotus floridanus Cflo_03603--XP_001120531.1_APIME I
CLEC025065 Cimex lectularius CLEC025065 I
CLEC007515 Cimex lectularius CLEC007515 I
KGM_21348 Danaus plexippus KGM_21348 I
KGM_10290 Danaus plexippus KGM_10290 I
DAPPUDRAFT_290668 Daphnia pulex DAPPUDRAFT_290668 I
DAPPUDRAFT_290673 Daphnia pulex DAPPUDRAFT_290673 I
GF24121 Drosophila ananassae FBgn0101115 I
GF24122 Drosophila ananassae FBgn0101116 I
GF25170 Drosophila ananassae FBgn0102162 I
GG13294 Drosophila erecta FBgn0105566 I
GG13292 Drosophila erecta FBgn0105564 I
GG16225 Drosophila erecta FBgn0108460 I
GH16373 Drosophila grimshawi FBgn0123844 I
GH16981 Drosophila grimshawi FBgn0124452 I
GH16982 Drosophila grimshawi FBgn0124453 I
knrl Drosophila melanogaster FBgn0001323 D
eg Drosophila melanogaster FBgn0000560 D
kni Drosophila melanogaster FBgn0001320 D
GI11900 Drosophila mojavensis FBgn0134658 I
GI11896 Drosophila mojavensis FBgn0134654 I
GI11566 Drosophila mojavensis FBgn0134326 I
GL24862 Drosophila persimilis FBgn0162450 I
GL12764 Drosophila persimilis FBgn0150370 I
GL12762 Drosophila persimilis FBgn0150368 I
GA20312 Drosophila pseudoobscura FBgn0080307 I
GA18413 Drosophila pseudoobscura FBgn0078415 I
GA18381 Drosophila pseudoobscura FBgn0078384 I
GM22199 Drosophila sechellia FBgn0177069 I
kni Drosophila sechellia FBgn0044208 I
GD15001 Drosophila simulans FBgn0186673 I
GD12173 Drosophila simulans FBgn0183909 I
kni Drosophila simulans FBgn0044187 I
GJ11245 Drosophila virilis FBgn0198506 I
kni Drosophila virilis FBgn0013118 I
GJ13774 Drosophila virilis FBgn0200993 I
GK17344 Drosophila willistoni FBgn0219343 I
GK10545 Drosophila willistoni FBgn0212560 I
GK10566 Drosophila willistoni FBgn0212581 I
GE23274 Drosophila yakuba FBgn0240471 I
GE22392 Drosophila yakuba FBgn0239615 I
GE22389 Drosophila yakuba FBgn0239612 I
GE19793 Drosophila yakuba FBgn0237126 I
HHAL001315-PA Halyomorpha halys HHAL001315-PA I
Hsal_02927--XP_395932.2_APIME Harpegnathos saltator Hsal_02927--XP_395932.2_APIME I
Hsal_02933--XP_001120662.1_APIME Harpegnathos saltator Hsal_02933--XP_001120662.1_APIME I
Hsal_02936--XP_001120531.1_APIME Harpegnathos saltator Hsal_02936--XP_001120531.1_APIME I
HMEL010451 Heliconius melpomene HMEL010451 I
HDID_0000406601 Hymenolepis diminuta HDID_0000406601 I
HNAJ_0001369901 Hymenolepis nana HNAJ_0001369901 I
LDEC003050 Leptinotarsa decemlineata LDEC003050 I
LCUP004920 Lucilia cuprina LCUP004920 I
LCUP004919 Lucilia cuprina LCUP004919 I
MDOA008593 Musca domestica MDOA008593 I
MDOA002495 Musca domestica MDOA002495 I
MDOA012160 Musca domestica MDOA012160 I
NV16468 Nasonia vitripennis NV16468 I
PHUM470190 Pediculus humanus PHUM470190 I
PHUM468660 Pediculus humanus PHUM468660 I
PPAI002202 Phlebotomus papatasi PPAI002202 I
RPRC003216 Rhodnius prolixus RPRC003216 I
nRc.2.0.1.g43935 Romanomermis culicivorax nRc.2.0.1.g43935 I
SINV19531 Solenopsis invicta SINV19531 I
SINV19432 Solenopsis invicta SINV19432 I
SMAR012614 Strigamia maritima SMAR012614 I
tetur34g00430 Tetranychus urticae tetur34g00430 I
TC003413 Tribolium castaneum TC003413 I
TC003409 Tribolium castaneum TC003409 I
L798_11128 Zootermopsis nevadensis L798_11128 I