Irf6 (Rattus norvegicus)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSRNOG00000005082 T244364_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		1.000 1.000
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		1.000 1.000
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		1.000 1.000
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		1.000 1.000
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		1.000 1.000
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.943 0.943
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.933 0.933
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.914 0.914
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.790 0.790
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000007333 IRF 9 114

Links

Other IRF family TFs
Other Rattus norvegicus TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G41470 Brachypodium distachyon BRADI3G41470 N
BRADI4G34800 Brachypodium distachyon BRADI4G34800 N
Ca_22941 Cicer arietinum Ca_22941 N
Cla019597 Citrullus lanatus Cla019597 N
Cucsa.157080 Cucumis sativus Cucsa.157080 N
Eucgr.K02205 Eucalyptus grandis Eucgr.K02205 N
Eucgr.I02578 Eucalyptus grandis Eucgr.I02578 N
Eucgr.G01047 Eucalyptus grandis Eucgr.G01047 N
Eucgr.H00826 Eucalyptus grandis Eucgr.H00826 N
Eucgr.G01053 Eucalyptus grandis Eucgr.G01053 N
Eucgr.G01049 Eucalyptus grandis Eucgr.G01049 N
gene01364-v1.0-hybrid Fragaria vesca gene01364-v1.0-hybrid N
MLOC_55957 Hordeum vulgare MLOC_55957 N
LPERR09G12100 Leersia perrieri LPERR09G12100 N
LPERR08G18520 Leersia perrieri LPERR08G18520 N
Lus10032004.g Linum usitatissimum Lus10032004.g N
mgf006124m Mimulus guttatus mgf006124m N
OBART08G21800 Oryza barthii OBART08G21800 N
OBART09G15890 Oryza barthii OBART09G15890 N
OB09G22520 Oryza brachyantha OB09G22520 N
ORGLA08G0227400 Oryza glaberrima ORGLA08G0227400 N
ORGLA09G0123200 Oryza glaberrima ORGLA09G0123200 N
OGLUM09G16460 Oryza glumaepatula OGLUM09G16460 N
BGIOSGA031062 Oryza indica BGIOSGA031062 N
BGIOSGA029063 Oryza indica BGIOSGA029063 N
OLONG_020119 Oryza longistaminata OLONG_020119 N
OMERI09G11810 Oryza meridionalis OMERI09G11810 N
OMERI06G13840 Oryza meridionalis OMERI06G13840 N
ONIVA09G17010 Oryza nivara ONIVA09G17010 N
ONIVA08G24840 Oryza nivara ONIVA08G24840 N
OPUNC09G14320 Oryza punctata OPUNC09G14320 N
OPUNC08G19870 Oryza punctata OPUNC08G19870 N
ORUFI09G17170 Oryza rufipogon ORUFI09G17170 N
ORUFI08G24230 Oryza rufipogon ORUFI08G24230 N
OS08G0535800 Oryza sativa OS08G0535800 N
OS09G0509100 Oryza sativa OS09G0509100 N
Pavir.J23083 Panicum virgatum Pavir.J23083 N
Pavir.J11699 Panicum virgatum Pavir.J11699 N
Pavir.J04931 Panicum virgatum Pavir.J04931 N
Pavir.Fb00689 Panicum virgatum Pavir.Fb00689 N
SELMODRAFT_69131 Selaginella moellendorffii SELMODRAFT_69131 N
SELMODRAFT_69130 Selaginella moellendorffii SELMODRAFT_69130 N
Si014408m.g Setaria italica Si014408m.g N
Si030942m.g Setaria italica Si030942m.g N
Sb03g031000 Sorghum bicolor Sb03g031000 N
Sb02g029460 Sorghum bicolor Sb02g029460 N
Traes_5BL_456C3408A Triticum aestivum Traes_5BL_456C3408A N
Traes_5DL_36AE1EF2B Triticum aestivum Traes_5DL_36AE1EF2B N
TRIUR3_25303 Triticum urartu TRIUR3_25303 N
GRMZM2G179049 Zea mays GRMZM2G179049 N
GRMZM2G100583 Zea mays GRMZM2G100583 N
GRMZM2G054277 Zea mays GRMZM2G054277 N
GRMZM2G054252 Zea mays GRMZM2G054252 N