Bra001087 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra001087 T245031_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.838 0.838
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.838 0.838
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.794 0.794
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.794 0.794
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.794 0.794
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.794 0.794
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.794 0.794
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.706 0.706
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001087.1-P LOB 52 120

Links

Other LOB family TFs
Other Brassica rapa TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB04375.1 Alternaria brassicicola AB04375.1 I
AOL_s00054g326 Arthrobotrys oligospora AOL_s00054g326 I
MCYG_00903 Arthroderma otae MCYG_00903 I
ANIA_04077 Aspergillus nidulans CADANIAG00004604 I
EURHEDRAFT_458005 Aspergillus ruber EURHEDRAFT_458005 I
ATEG_03075 Aspergillus terreus CADATEAG00010055 I
M437DRAFT_83473 Aureobasidium melanogenum M437DRAFT_83473 I
M438DRAFT_281095 Aureobasidium pullulans M438DRAFT_281095 I
AUEXF2481DRAFT_4398 Aureobasidium subglaciale AUEXF2481DRAFT_4398 I
BAUCODRAFT_144230 Baudoinia compniacensis BAUCODRAFT_144230 I
COCC4DRAFT_126547 Bipolaris maydis COCC4DRAFT_126547 I
COCMIDRAFT_84665 Bipolaris oryzae COCMIDRAFT_84665 I
COCSADRAFT_102727 Bipolaris sorokiniana COCSADRAFT_102727 I
COCVIDRAFT_34345 Bipolaris victoriae COCVIDRAFT_34345 I
COCCADRAFT_37717 Bipolaris zeicola COCCADRAFT_37717 I
Bcin10g03410 Botrytis cinerea Bcin10g03410 I
PVAR5_6448 Byssochlamys spectabilis PVAR5_6448 I
CHGG_02890 Chaetomium globosum CHGG_02890 I
CTHT_0024110 Chaetomium thermophilum CTHT_0024110 I
CIMG_03917 Coccidioides immitis CIMG_03917 I
CPC735_004330 Coccidioides posadasii CPC735_004330 I
CFIO01_11469 Colletotrichum fioriniae CFIO01_11469 I
CGGC5_5606 Colletotrichum gloeosporioides CGGC5_5606 I
GLRG_03674 Colletotrichum graminicola GLRG_03674 I
Cob_12532 Colletotrichum orbiculare Cob_12532 I
W97_02650 Coniosporium apollinis W97_02650 I
fgenesh1_pg.C_scaffold_1000989 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000989 I
H072_1719 Dactylellina haptotyla H072_1719 I
DOTSEDRAFT_68166 Dothistroma septosporum DOTSEDRAFT_68166 I
DRE_01415 Drechslerella stenobrocha DRE_01415 I
EPUS_04985 Endocarpon pusillum EPUS_04985 I
GGTG_08149 Gaeumannomyces graminis GGTG_08149 I
CMQ_7525 Grosmannia clavigera CMQ_7525 N
HCBG_06971 Histoplasma capsulatum HCBG_06971 I
LEMA_P018010.1 Leptosphaeria maculans LEMA_P018010.1 I
MPH_05713 Macrophomina phaseolina MPH_05713 I
MGG_13165 Magnaporthe oryzae MGG_13165 N
MAPG_07954 Magnaporthe poae MAPG_07954 I
MGU_01854 Metarhizium guizhouense MGU_01854 N
MAJ_01159 Metarhizium majus MAJ_01159 N
MCYG_00903 Microsporum canis MCYG_00903 I
MYCTH_2304200 Myceliophthora thermophila MYCTH_2304200 I
UCRNP2_6191 Neofusicoccum parvum UCRNP2_6191 I
NFIA_019220 Neosartorya fischeri CADNFIAG00000884 I
NCU00392 Neurospora crassa NCU00392 D
estExt_Genewise1.C_50564 Neurospora discreta estExt_Genewise1.C_50564 I
NEUTE1DRAFT_137852 Neurospora tetrasperma NEUTE1DRAFT_137852 I
OIDMADRAFT_60194 Oidiodendron maius OIDMADRAFT_60194 I
F503_07914 Ophiostoma piceae uamh F503_07914 I
PABG_02907 Paracoccidioides brasiliensis PABG_02907 I
PAAG_08645 Paracoccidioides sp lutzii PAAG_08645 I
Pc18g02200 Penicillium chrysogenum Pc18g02200 I
PDIP_73930 Penicillium digitatum PDIP_73930 I
PEX1_076370 Penicillium expansum PEX1_076370 I
PITC_027910 Penicillium italicum PITC_027910 I
PMAA_024740 Penicillium marneffei PMAA_024740 I
PDE_02765 Penicillium oxalicum PDE_02765 I
PCH_Pc18g02200 Penicillium rubens PCH_Pc18g02200 I
U727_00431293291 Penicillium solitum U727_00431293291 I
PFICI_03782 Pestalotiopsis fici PFICI_03782 I
SNOG_11811 Phaeosphaeria nodorum SNOG_11811 I
PTT_13020 Pyrenophora teres PTT_13020 I
PTRG_00243 Pyrenophora triticirepentis PTRG_00243 I
SAPIO_CDS5850 Scedosporium apiospermum SAPIO_CDS5850 I
SBOR_2000 Sclerotinia borealis SBOR_2000 I
SS1G_06977 Sclerotinia sclerotiorum SS1G_06977 I
SETTUDRAFT_102560 Setosphaeria turcica SETTUDRAFT_102560 I
SMAC_08830 Sordaria macrospora SMAC_08830 I
PMAA_024740 Talaromyces marneffei PMAA_024740 I
TSTA_033430 Talaromyces stipitatus TSTA_033430 I
THITE_2119520 Thielavia terrestris THITE_2119520 I
TEQG_01462 Trichophyton equinum TEQG_01462 N
H101_07436 Trichophyton interdigitale H101_07436 N
H102_07847 Trichophyton rubrum H102_07847 N
H105_07872 Trichophyton soudanense H105_07872 N
PV09_02665 Verruconis gallopava PV09_02665 I
VDAG_06431 Verticillium dahliae VDAG_06431 I