cassava20865.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava20865.m1 T246450_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.808 0.808
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.778 0.778
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava20865.m1 LOB 6 104

Links

Other LOB family TFs
Other Manihot esculenta TFs

320 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00047p00131170 Amborella trichopoda AMTR_s00047p00131170 I
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I
Aquca_013_00902 Aquilegia coerulea Aquca_013_00902 I
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I
TBP2 Arabidopsis thaliana AT1G55520 I
ENSAMXG00000003582 Astyanax mexicanus ENSAMXG00000003582 I
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I
Bo2g007300 Brassica oleracea Bo2g007300 I
Bo3g185290 Brassica oleracea Bo3g185290 I
Bo6g051360 Brassica oleracea Bo6g051360 I
Bra028725 Brassica rapa Bra028725 I
Bra030855 Brassica rapa Bra030855 I
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I
CPAG_04505 Candida parapsilosis CPAG_04505 I
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I
Carubv10010337m.g Capsella rubella Carubv10010337m.g I
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I
tbp Danio rerio ENSDARG00000014994 I
Thhalv10022351m.g Eutrema salsugineum Thhalv10022351m.g I
ENSGMOG00000012435 Gadus morhua ENSGMOG00000012435 I
TBPL2 Gallus gallus ENSGALG00000012145 I
tbp Gasterosteus aculeatus ENSGACG00000016147 I
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I
MLOC_37365 Hordeum vulgare MLOC_37365 I
LPERR10G07850 Leersia perrieri LPERR10G07850 I
LELG_01062 Lodderomyces elongisporus LELG_01062 I
LotgiG129673 Lottia gigantea LotgiG129673 I
MDP0000289755 Malus domestica MDP0000289755 I
MTR_4g029010 Medicago truncatula MTR_4g029010 I
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I
TBPL2 Microcebus murinus ENSMICG00000000943 I
mgf009543m Mimulus guttatus mgf009543m I
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I
ENSONIG00000017061 Oreochromis niloticus ENSONIG00000017061 I
ORGLA06G0285000 Oryza glaberrima ORGLA06G0285000 I
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I
BGIOSGA013244 Oryza indica BGIOSGA013244 I
BGIOSGA031868 Oryza indica BGIOSGA031868 I
OLONG_010453 Oryza longistaminata OLONG_010453 I
OMERI10G08240 Oryza meridionalis OMERI10G08240 I
ONIVA01G08510 Oryza nivara ONIVA01G08510 I
OPUNC01G04710 Oryza punctata OPUNC01G04710 I
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I
OS10G0432300 Oryza sativa OS10G0432300 I
tbp Oryzias latipes ENSORLG00000010757 I
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I
Pavir.J18057 Panicum virgatum Pavir.J18057 I
Pavir.J26398 Panicum virgatum Pavir.J26398 I
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I
PDK_20s1328661g002 Phoenix dactylifera PDK_20s1328661g002 I
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I
PredSwiss_CON251.1 Pneumocystis carinii PredSwiss_CON251.1 I
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I
PNEG_00724 Pneumocystis murina PNEG_00724 I
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I
RO3G_15549 Rhizopus oryzae RO3G_15549 I
RO3G_16620 Rhizopus oryzae RO3G_16620 I
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I
SU7_0942 Saccharomyces arboricola SU7_0942 I
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I
PICST_38880 Scheffersomyces stipitis PICST_38880 I
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I
Si039719m.g Setaria italica Si039719m.g I
Si023295m.g Setaria italica Si023295m.g I
Sb08g022273 Sorghum bicolor Sb08g022273 I
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I
trf3 Takifugu rubripes ENSTRUG00000009283 I
tbpl2 Tetraodon nigroviridis ENSTNIG00000002597 I
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I
TBPL2 Tursiops truncatus ENSTTRG00000002034 I
tbpl2.L Xenopus laevis XB-GENE-876147 I
GRMZM2G161418 Zea mays GRMZM2G161418 I