Bostr.0556s0333 (Boechera stricta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Bostr.0556s0333 T246660_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.939 0.939
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.939 0.939
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0556s0333.1.p LOB 5 103

Links

Other LOB family TFs
Other Boechera stricta TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_06135 Aegilops tauschii F775_06135 N 0.000
F775_07987 Aegilops tauschii F775_07987 N 0.000
Bostr.19424s0744 Boechera stricta Bostr.19424s0744 N 0.000
Bo6g124000 Brassica oleracea Bo6g124000 N 0.000
Bra035129 Brassica rapa Bra035129 N 0.000
evm.TU.supercontig_62.23 Carica papaya evm.TU.supercontig_62.23 N 0.000
MLOC_76431 Hordeum vulgare MLOC_76431 N 0.000
LPERR06G05590 Leersia perrieri LPERR06G05590 N 0.000
Lus10014044.g Linum usitatissimum Lus10014044.g N 0.000
MTR_3g101520 Medicago truncatula MTR_3g101520 N 0.000
mgf008645m Mimulus guttatus mgf008645m N 0.000
OB06G15600 Oryza brachyantha OB06G15600 N 0.000
ORGLA06G0055700 Oryza glaberrima ORGLA06G0055700 N 0.000
OGLUM06G06330 Oryza glumaepatula OGLUM06G06330 N 0.000
BGIOSGA022464 Oryza indica BGIOSGA022464 N 0.000
OLONG_013315 Oryza longistaminata OLONG_013315 N 0.000
OMERI06G07230 Oryza meridionalis OMERI06G07230 N 0.000
ONIVA06G07020 Oryza nivara ONIVA06G07020 N 0.000
ORUFI06G06290 Oryza rufipogon ORUFI06G06290 N 0.000
OS06G0194400 Oryza sativa OS06G0194400 N 0.000
Pavir.Fb00845 Panicum virgatum Pavir.Fb00845 N 0.000
Pavir.J28012 Panicum virgatum Pavir.J28012 N 0.000
Pm005256 Prunus mume Pm005256 N 0.000
PRUPE_ppb024440mg Prunus persica PRUPE_ppb024440mg N 0.000
Si014404m.g Setaria italica Si014404m.g N 0.000
Sb07g006170 Sorghum bicolor Sb07g006170 N 0.000
Sb06g028730 Sorghum bicolor Sb06g028730 N 0.000
Sb03g026620 Sorghum bicolor Sb03g026620 N 0.000
Traes_4AL_1D254E0E4 Triticum aestivum Traes_4AL_1D254E0E4 N 0.000
Traes_7AS_A4B5D1816 Triticum aestivum Traes_7AS_A4B5D1816 N 0.000
Traes_7BS_9D1E05CB7 Triticum aestivum Traes_7BS_9D1E05CB7 N 0.000
Traes_7DS_A234A13E1 Triticum aestivum Traes_7DS_A234A13E1 N 0.000
Traes_7DS_C57224E6E Triticum aestivum Traes_7DS_C57224E6E N 0.000
TRIUR3_03303 Triticum urartu TRIUR3_03303 N 0.000
GRMZM2G173321 Zea mays GRMZM2G173321 N 0.000
GRMZM2G106673 Zea mays GRMZM2G106673 N 0.000