Carubv10027995m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10027995m.g T250635_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G47660
M02266_2.00 		Arabidopsis thaliana
RCGGTAAW
WTTACCGY		 PBM
Weirauch et al.(2014)
pTH7911 		0.944 0.652
AT5G47660
M06980_2.00 		Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY		 Dap-seq
OMalley et al.(2016)
AT5G47660_col_a 		0.944 0.652
AT5G47660
M06981_2.00 		Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW		 Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a 		0.944 0.652
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027995m MADF 306 377

Links

Other MADF family TFs
Other Capsella rubella TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0008_21 Arabidopsis lyrata Al_scaffold_0008_21 I 0.938
AT5G47660 Arabidopsis thaliana AT5G47660 D 0.944
Bostr.14419s0059 Boechera stricta Bostr.14419s0059 I 0.948
Bo2g133550 Brassica oleracea Bo2g133550 I 0.899
Bra022149 Brassica rapa Bra022149 I 0.901
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.971
evm.TU.supercontig_27.230 Carica papaya evm.TU.supercontig_27.230 N 0.841
Ca_07908 Cicer arietinum Ca_07908 N 0.858
Cla009202 Citrullus lanatus Cla009202 N 0.845
Cucsa.180580 Cucumis sativus Cucsa.180580 N 0.845
Thhalv10000907m.g Eutrema salsugineum Thhalv10000907m.g I 0.890
GLYMA09G01670 Glycine max GLYMA09G01670 N 0.858
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.829
Gorai.010G248600 Gossypium raimondii Gorai.010G248600 N 0.825
LjSGA_128947.1 Lotus japonicus LjSGA_128947.1 N 0.848
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.869
Pm009623 Prunus mume Pm009623 N 0.835
PRUPE_ppa026454mg Prunus persica PRUPE_ppa026454mg N 0.835
TCM_030445 Theobroma cacao TCM_030445 N 0.836
VIT_00s0956g00030 Vitis vinifera VIT_00s0956g00030 N 0.827
VIT_00s0259g00210 Vitis vinifera VIT_00s0259g00210 N 0.842