evm.TU.contig_35009 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_35009 T258081_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_35009.1 MADS box 10 53

Links

Other MADS box family TFs
Other Carica papaya TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AFAF009984 Anopheles farauti AFAF009984 N
ASTEI11547 Anopheles stephensi ASTEI11547 N
CLEC007928 Cimex lectularius CLEC007928 N
csin104030 Clonorchis sinensis csin104030 N
ENSDNOG00000046638 Dasypus novemcinctus ENSDNOG00000046638 N
ENSDNOG00000034905 Dasypus novemcinctus ENSDNOG00000034905 N
GL15829 Drosophila persimilis FBgn0153433 N
ENSETEG00000016379 Echinops telfairi ENSETEG00000016379 N
ECPE_0001091201 Echinostoma caproni ECPE_0001091201 N
ECPE_0001414101 Echinostoma caproni ECPE_0001414101 N
Gfo_R010508 Geospiza fortis Gfo_R010508 N
GPLIN_000727200 Globodera pallida GPLIN_000727200 N
MESCA001453 Megaselia scalaris MESCA001453 N
MDOA008812 Musca domestica MDOA008812 N
Ocbimv22036873m.g Octopus bimaculoides Ocbimv22036873m.g N
HMGB2 Ornithorhynchus anatinus ENSOANG00000029120 N
L596_g22130 Steinernema carpocapsae L596_g22130 N
L892_g11245 Steinernema scapterisci L892_g11245 N
ENSTGUG00000006267 Taeniopygia guttata ENSTGUG00000006267 N
TRE_0001071501 Trichobilharzia regenti TRE_0001071501 N
HMGB1 Tupaia belangeri ENSTBEG00000013046 N