Lus10014578.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10014578.g T258558_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10014578 MADS box 10 58

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005109 Ailuropoda melanoleuca ENSAMEG00000005109 I
Alligator_sinensis_CCG015719.1 Alligator sinensis Alligator_sinensis_CCG015719.1 I
Alligator_sinensis_CCG004564.1 Alligator sinensis Alligator_sinensis_CCG004564.1 I
Alligator_sinensis_CCG003696.1 Alligator sinensis Alligator_sinensis_CCG003696.1 I
ENSAPLG00000006203 Anas platyrhynchos ENSAPLG00000006203 I
ENSAPLG00000009319 Anas platyrhynchos ENSAPLG00000009319 I
IRF6 Anolis carolinensis ENSACAG00000005931 I
Afo_R001981 Aptenodytes forsteri Afo_R001981 I
ENSP00000349770-D1 Bos grunniens ENSP00000349770-D1 I
IRF5 Bos taurus ENSBTAG00000004989 I
IRF5 Callithrix jacchus ENSCJAG00000018061 I
IRF5 Canis familiaris ENSCAFG00000001611 I
Cmyd_10010684 Chelonia mydas Cmyd_10010684 I
Cmyd_10002838 Chelonia mydas Cmyd_10002838 I
ENSCSAG00000009970 Chlorocebus sabaeus ENSCSAG00000009970 I
irf5 Danio rerio ENSDARG00000045681 I
IRF5 Dasypus novemcinctus ENSDNOG00000013370 I
Irf5 Dipodomys ordii ENSDORG00000010627 I
IRF5 Echinops telfairi ENSETEG00000002100 I
IRF5 Equus caballus ENSECAG00000009902 I
IRF5 Erinaceus europaeus ENSEEUG00000014653 I
IRF5 Felis catus ENSFCAG00000000956 I
ENSFALG00000000504 Ficedula albicollis ENSFALG00000000504 I
ENSGMOG00000007264 Gadus morhua ENSGMOG00000007264 I
IRF6 Gallus gallus ENSGALG00000001405 D
irf5 Gasterosteus aculeatus ENSGACG00000000695 I
IRF5 Gorilla gorilla ENSGGOG00000012013 I
IRF5 Homo sapiens ENSG00000128604 D
ENSSTOG00000004858 Ictidomys tridecemlineatus ENSSTOG00000004858 I
ENSLACG00000005750 Latimeria chalumnae ENSLACG00000005750 I
ENSLACG00000018600 Latimeria chalumnae ENSLACG00000018600 I
ENSLOCG00000015563 Lepisosteus oculatus ENSLOCG00000015563 I
IRF5 Loxodonta africana ENSLAFG00000021568 I
ENSP00000349770 Macaca fascicularis ENSP00000349770 I
IRF5 Macaca mulatta ENSMMUG00000018478 I
ENSMEUG00000002435 Macropus eugenii ENSMEUG00000002435 I
ENSMEUG00000014941 Macropus eugenii ENSMEUG00000014941 I
IRF6 Meleagris gallopavo ENSMGAG00000004431 D
IRF5 Microcebus murinus ENSMICG00000000138 I
IRF5 Monodelphis domestica ENSMODG00000014710 I
IRF6 Monodelphis domestica ENSMODG00000002539 I
ENSMPUG00000006034 Mustela putorius furo ENSMPUG00000006034 I
Irf5 Mus musculus ENSMUSG00000029771 D
Myotis_brandtii_IRF5_10012830 Myotis brandtii Myotis_brandtii_IRF5_10012830 I
IRF5 Myotis lucifugus ENSMLUG00000001406 I
ENSNLEG00000012454 Nomascus leucogenys ENSNLEG00000012454 I
IRF5 Ochotona princeps ENSOPRG00000006148 I
ENSONIG00000007600 Oreochromis niloticus ENSONIG00000007600 I
IRF6 Ornithorhynchus anatinus ENSOANG00000013718 I
IRF5 Ornithorhynchus anatinus ENSOANG00000011449 I
IRF5 Oryctolagus cuniculus ENSOCUG00000010101 D
IRF5 Otolemur garnettii ENSOGAG00000009608 I
ENSOARG00000003908 Ovis aries ENSOARG00000003908 I
IRF5 Pan troglodytes ENSPTRG00000019675 I
ENSPANG00000018384 Papio anubis ENSPANG00000018384 I
ENSPSIG00000003597 Pelodiscus sinensis ENSPSIG00000003597 I
ENSPFOG00000013528 Poecilia formosa ENSPFOG00000013528 I
Pvit_15428 Pogona vitticeps Pvit_15428 I
Pvit_14327 Pogona vitticeps Pvit_14327 I
ENSPPYG00000017989 Pongo abelii ENSPPYG00000017989 I
IRF5 Pteropus vampyrus ENSPVAG00000015756 I
Irf5 Rattus norvegicus ENSRNOG00000007437 I
ENSSHAG00000006683 Sarcophilus harrisii ENSSHAG00000006683 I
IRF5 Sus scrofa ENSSSCG00000016573 I
IRF6 Sus scrofa ENSSSCG00000015612 I
IRF6 Taeniopygia guttata ENSTGUG00000001485 I
irf5 Takifugu rubripes ENSTRUG00000000641 I
irf5 Tetraodon nigroviridis ENSTNIG00000003346 I
irf6.2.L Xenopus laevis XB-GENE-5910427 I
irf6.S Xenopus laevis XB-GENE-876421 I
irf5.L Xenopus laevis XB-GENE-998629 D
irf6.2 Xenopus tropicalis XB-GENE-5910331 D
irf5 Xenopus tropicalis XB-GENE-998624 I
ENSXMAG00000013056 Xiphophorus maculatus ENSXMAG00000013056 I