Bo6g107160 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo6g107160 T267447_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HHO2
M02290_2.00 		Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH7115 		0.909 0.979
HHO2
M07029_2.00 		Arabidopsis thaliana
AKATTCY
RGAATMT		 Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a 		0.909 0.979
HHO2
M07030_2.00 		Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY		 Dap-seq
OMalley et al.(2016)
At1g68670_col 		0.909 0.979
HHO3
M02289_2.00 		Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN		 PBM
Weirauch et al.(2014)
pTH7278 		0.891 0.979
HHO3
M07016_2.00 		Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN		 Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a 		0.891 0.979
HHO3
M07017_2.00 		Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND		 Dap-seq
OMalley et al.(2016)
At1g25550_col 		0.891 0.979
NIGT1
M02328_2.00 		Oryza sativa
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH8646 		0.883 0.915
HHO6
M07024_2.00 		Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC		 Dap-seq
OMalley et al.(2016)
AT1G49560_col_a 		0.840 0.872
HHO6
M07025_2.00 		Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH		 Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a 		0.840 0.872
PK19779.1
M02354_2.00 		Cannabis sativa
NNKATNCNNN
NNNGNATMNN		 PBM
Weirauch et al.(2014)
pTH9610 		0.834 0.894
EFM
M07044_2.00 		Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN		 Dap-seq
OMalley et al.(2016)
At2g03500_col_a 		0.817 0.872
EFM
M07045_2.00 		Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY		 Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a 		0.817 0.872
PK14402.1
M02352_2.00 		Cannabis sativa
NDWGATTCSNN
NNSGAATCWHN		 PBM
Weirauch et al.(2014)
pTH9491 		0.782 0.830
HRS1
M02284_2.00 		Arabidopsis thaliana
AGATTCYN
NRGAATCT		 PBM
Weirauch et al.(2014)
pTH7118 		0.773 0.851
HRS1
M01068_2.00 		Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN		 PBM
Sullivan et al.(2014)
pTH7648 		0.773 0.851
HRS1
M07004_2.00 		Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN		 Dap-seq
OMalley et al.(2016)
At1g13300_col_a 		0.773 0.851
HHO5
M07112_2.00 		Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND		 Dap-seq
OMalley et al.(2016)
AT4G37180_col_a 		0.696 0.809
HHO5
M07113_2.00 		Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN		 Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a 		0.696 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g107160.1 Myb 216 267

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_ABR055C Ashbya gossypii AGOS_ABR055C I
CaO19.610 Candida albicans CaO19.610 I
CaO19.8243 Candida albicans CaO19.8243 I
CD36_33560 Candida dubliniensis CD36_33560 I
CAGL0L01771g Candida glabrata CAGL0L01771g I
PGUG_03651 Candida guilliermondii PGUG_03651 I
CLUG_02047 Candida lusitaniae CLUG_02047 I
G210_4810 Candida maltosa G210_4810 I
CORT_0G01760 Candida orthopsilosis CORT_0G01760 I
CPAG_00178 Candida parapsilosis CPAG_00178 I
CLUG_02047 Clavispora lusitaniae CLUG_02047 I
DEHA2E10978g Debaryomyces hansenii DEHA2E10978g I
Ecym_4584 Eremothecium cymbalariae Ecym_4584 I
KAFR_0A02120 Kazachstania africana KAFR_0A02120 I
KAFR_0B01410 Kazachstania africana KAFR_0B01410 I
KLLA0_F04840g Kluyveromyces lactis KLLA0_F04840g I
KLTH0D07876g Kluyveromyces thermotolerans KLTH0D07876g I
Kwal_8176 Kluyveromyces waltii Kwal_8176 I
PAS_chr1-4_0530 Komagataella pastoris PAS_chr1-4_0530 I
KUCA_T00004103001 Kuraishia capsulata KUCA_T00004103001 I
SAKL0D13442g Lachancea kluyveri SAKL0D13442g I
LALA0_S02e00628g Lachancea lanzarotensis LALA0_S02e00628g I
KLTH0D07876g Lachancea thermotolerans KLTH0D07876g I
LELG_05390 Lodderomyces elongisporus LELG_05390 I
PGUG_03651 Meyerozyma guilliermondii PGUG_03651 I
GNLVRS01_PISO0E14370g Millerozyma farinosa GNLVRS01_PISO0E14370g I
GNLVRS01_PISO0F15757g Millerozyma farinosa GNLVRS01_PISO0F15757g I
NCAS_0A04710 Naumovozyma castellii NCAS_0A04710 I
HPODL_04965 Ogataea parapolymorpha HPODL_04965 I
HPODL_01835 Ogataea parapolymorpha HPODL_01835 I
JL09_g3139 Pichia kudriavzevii JL09_g3139 I
XP_002490663.1 Pichia pastoris XP_002490663.1 I
estExt_fgenesh1_pg.C_chr_3.10654 Pichia stipitis estExt_fgenesh1_pg.C_chr_3.10654 I
SU7_2504 Saccharomyces arboricola SU7_2504 I
17689_YMR016C Saccharomyces bayanus 17689_YMR016C I
14607_YKL043W Saccharomyces bayanus 14607_YKL043W I
Scas_Contig625.8 Saccharomyces castellii Scas_Contig625.8 I
PHD1 Saccharomyces cerevisiae YKL043W D
SOK2 Saccharomyces cerevisiae YMR016C D
SKUD_205603 Saccharomyces kudriavzevii SKUD_205603 I
SKUD_205409 Saccharomyces kudriavzevii SKUD_205409 I
16462_YMR016C Saccharomyces mikatae 16462_YMR016C I
13508_YKL043W Saccharomyces mikatae 13508_YKL043W I
17269_YMR016C Saccharomyces paradoxus 17269_YMR016C I
PICST_67427 Scheffersomyces stipitis PICST_67427 I
SPAPADRAFT_59209 Spathaspora passalidarum SPAPADRAFT_59209 I
TDEL_0B06530 Torulaspora delbrueckii TDEL_0B06530 I
Kpol_460p25 Vanderwaltozyma polyspora Kpol_460p25 I
BN7_6724 Wickerhamomyces ciferrii BN7_6724 I
YALI0_D01573g Yarrowia lipolytica YALI0_D01573g I
ZBAI_08486 Zygosaccharomyces bailii ZBAI_08486 I
ZBAI_03487 Zygosaccharomyces bailii ZBAI_03487 I
ZYRO0E06248g Zygosaccharomyces rouxii ZYRO0E06248g I