Bo6g119010 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo6g119010 T267460_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.841 0.915
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.829 0.915
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.829 0.915
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.829 0.915
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.829 0.872
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.813 0.830
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.811 0.851
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.805 0.872
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.805 0.872
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.805 0.872
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.803 0.809
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.754 0.809
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.753 0.787
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.753 0.787
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.753 0.787
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.742 0.766
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.742 0.766
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.731 0.787
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.710 0.681
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.710 0.681
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.701 0.745
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.701 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g119010.1 Myb 83 130

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

567 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01928 Aegilops tauschii F775_01928 I
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I
AT2G42040 Arabidopsis thaliana AT2G42040 D
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I
Bo3g035920 Brassica oleracea Bo3g035920 I
Bo4g014690 Brassica oleracea Bo4g014690 I
Bo4g191280 Brassica oleracea Bo4g191280 I
Bra000251 Brassica rapa Bra000251 I
Bra004667 Brassica rapa Bra004667 I
Bra016897 Brassica rapa Bra016897 I
PK26699.1 Cannabis sativa PK26699.1 I
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I
Carubv10023878m.g Capsella rubella Carubv10023878m.g I
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I
Ca_07320 Cicer arietinum Ca_07320 I
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I
Cucsa.242590 Cucumis sativus Cucsa.242590 I
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I
GLYMA19G33070 Glycine max GLYMA19G33070 I
GLYMA09G16841 Glycine max GLYMA09G16841 I
GLYMA03G30170 Glycine max GLYMA03G30170 I
GLYMA02G28962 Glycine max GLYMA02G28962 I
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I
MLOC_17575 Hordeum vulgare MLOC_17575 I
LPERR02G28190 Leersia perrieri LPERR02G28190 I
LPERR06G06210 Leersia perrieri LPERR06G06210 I
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I
MDP0000121493 Malus domestica MDP0000121493 I
MDP0000154434 Malus domestica MDP0000154434 I
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I
MTR_7g093360 Medicago truncatula MTR_7g093360 I
MTR_7g093350 Medicago truncatula MTR_7g093350 I
MTR_1g054175 Medicago truncatula MTR_1g054175 I
mgf007626m Mimulus guttatus mgf007626m I
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I
OBART06G06800 Oryza barthii OBART06G06800 I
OB06G16230 Oryza brachyantha OB06G16230 I
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I
BGIOSGA022518 Oryza indica BGIOSGA022518 I
BGIOSGA005516 Oryza indica BGIOSGA005516 I
OMERI06G07980 Oryza meridionalis OMERI06G07980 I
OMERI02G32570 Oryza meridionalis OMERI02G32570 I
ONIVA06G08110 Oryza nivara ONIVA06G08110 I
ONIVA02G36360 Oryza nivara ONIVA02G36360 I
OPUNC06G06450 Oryza punctata OPUNC06G06450 I
OPUNC02G31650 Oryza punctata OPUNC02G31650 I
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I
OS02G0773600 Oryza sativa OS02G0773600 I
OS06G0207600 Oryza sativa OS06G0207600 I
Pavir.J25248 Panicum virgatum Pavir.J25248 I
Pavir.J23833 Panicum virgatum Pavir.J23833 I
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I
Pm025936 Prunus mume Pm025936 I
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I
29613.m000377 Ricinus communis 29613.m000377 I
29613.m000379 Ricinus communis 29613.m000379 I
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I
Sb10g006810 Sorghum bicolor Sb10g006810 I
TCM_024932 Theobroma cacao TCM_024932 I
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I
GRMZM2G165991 Zea mays GRMZM2G165991 I
GRMZM2G134552 Zea mays GRMZM2G134552 N
GRMZM2G033915 Zea mays GRMZM2G033915 I