Bra037839 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra037839 T268129_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.860 0.957
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.860 0.957
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.860 0.957
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.860 0.957
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.706 0.870
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.702 0.804
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037839.1-P Myb 5 56

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008720 Aedes aegypti AAEL008720 I
AAEL010926 Aedes aegypti AAEL010926 I
ANCDUO_04431 Ancylostoma duodenale ANCDUO_04431 I
AALB009948 Anopheles albimanus AALB009948 I
AARA006325 Anopheles arabiensis AARA006325 I
AATE011966 Anopheles atroparvus AATE011966 I
ACHR000964 Anopheles christyi ACHR000964 I
ACOM041693 Anopheles coluzzii ACOM041693 I
ACUA004576 Anopheles culicifacies ACUA004576 I
ADAC008363 Anopheles darlingi ADAC008363 I
ADIR000346 Anopheles dirus ADIR000346 I
AEPI007010 Anopheles epiroticus AEPI007010 I
AFAF013563 Anopheles farauti AFAF013563 I
AFUN006147 Anopheles funestus AFUN006147 I
AGAP010512 Anopheles gambiae AGAP010512 I
AMIN001258 Anopheles minimus AMIN001258 I
AQUA001308 Anopheles quadriannulatus AQUA001308 I
ASIS007770 Anopheles sinensis ASIS007770 I
ASTEI07120 Anopheles stephensi ASTEI07120 I
Afo_R000461 Aptenodytes forsteri Afo_R000461 I
BGIBMGA001384 Bombyx mori BGIBMGA001384 I
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I
Brh_R011000 Buceros rhinoceros Brh_R011000 I
BXY_0217000 Bursaphelenchus xylophilus BXY_0217000 I
Aan_R005414 Calypte anna Aan_R005414 I
SRF Cavia porcellus ENSCPOG00000022327 I
Cmyd_10009988 Chelonia mydas Cmyd_10009988 I
CLEC013390 Cimex lectularius CLEC013390 I
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I
CpipJ_CPIJ008335 Culex pipiens CpipJ_CPIJ008335 I
CPIJ008335 Culex quinquefasciatus CPIJ008335 I
SRF Erinaceus europaeus ENSEEUG00000005614 I
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I
Gfo_R009695 Geospiza fortis Gfo_R009695 I
SRF Gorilla gorilla ENSGGOG00000006293 I
HPLM_0000743501 Haemonchus placei HPLM_0000743501 I
HHAL001485-PA Halyomorpha halys HHAL001485-PA I
Hba_21368 Heterorhabditis bacteriophora Hba_21368 I
SRF Loxodonta africana ENSLAFG00000010278 I
LCUP011663 Lucilia cuprina LCUP011663 I
LLOJ005985 Lutzomyia longipalpis LLOJ005985 I
ENSP00000265354 Macaca fascicularis ENSP00000265354 I
MESCA001358 Megaselia scalaris MESCA001358 I
MCINX015635 Melitaea cinxia MCINX015635 I
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I
Ogr17973 Ophisaurus gracilis Ogr17973 I
ENSOARG00000005757 Ovis aries ENSOARG00000005757 I
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I
RO3G_07165 Rhizopus oryzae RO3G_07165 I
O9G_005180 Rozella allomycis O9G_005180 I
SINV23954 Solenopsis invicta SINV23954 I
SRF Sorex araneus ENSSARG00000003401 I
SNOG_07763 Stagonospora nodorum SNOG_07763 I
SRF Taeniopygia guttata ENSTGUG00000004738 I
TELCIR_03792 Teladorsagia circumcincta TELCIR_03792 I
TELCIR_12851 Teladorsagia circumcincta TELCIR_12851 I
SRF Vicugna pacos ENSVPAG00000008912 I