ORGLA01G0168300 (Oryza glaberrima)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ORGLA01G0168300 T276629_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.787 0.830
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.787 0.830
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.787 0.830
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.787 0.830
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.753 0.872
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.701 0.809
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.677 0.766
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.677 0.766
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA01G0168300.1 Myb 5 57

Links

Other Myb/SANT family TFs
Other Oryza glaberrima TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_403653.1 Arabidopsis lyrata scaffold_403653.1 N
Bostr.25993s0085 Boechera stricta Bostr.25993s0085 N
BRADI1G71990 Brachypodium distachyon BRADI1G71990 N
BRADI3G38510 Brachypodium distachyon BRADI3G38510 N
BRADI3G58360 Brachypodium distachyon BRADI3G58360 N
Bo00615s100 Brassica oleracea Bo00615s100 N
Bo4g006950 Brassica oleracea Bo4g006950 N
Bra031865 Brassica rapa Bra031865 N
Cagra.0917s0051 Capsella grandiflora Cagra.0917s0051 N
evm.TU.supercontig_57.85 Carica papaya evm.TU.supercontig_57.85 N
Ca_22410 Cicer arietinum Ca_22410 N
Ciclev10020360m.g Citrus clementina Ciclev10020360m.g N
orange1.1g013752m.g Citrus sinensis orange1.1g013752m.g N
gene18608-v1.0-hybrid Fragaria vesca gene18608-v1.0-hybrid N
GLYMA07G05500 Glycine max GLYMA07G05500 N
GLYMA16G02020 Glycine max GLYMA16G02020 N
Gorai.007G113200 Gossypium raimondii Gorai.007G113200 N
Gorai.007G113300 Gossypium raimondii Gorai.007G113300 N
LPERR10G05620 Leersia perrieri LPERR10G05620 N
LPERR02G27220 Leersia perrieri LPERR02G27220 N
Lus10012603.g Linum usitatissimum Lus10012603.g N
Lus10015902.g Linum usitatissimum Lus10015902.g N
Lus10010101.g Linum usitatissimum Lus10010101.g N
chr3.CM0208.290.nc Lotus japonicus chr3.CM0208.290.nc N
cassava29786.valid.m1 Manihot esculenta cassava29786.valid.m1 N
OBART10G08120 Oryza barthii OBART10G08120 N
OBART02G33270 Oryza barthii OBART02G33270 N
OB10G16200 Oryza brachyantha OB10G16200 N
OB03G16590 Oryza brachyantha OB03G16590 N
OB02G40170 Oryza brachyantha OB02G40170 N
ORGLA02G0287300 Oryza glaberrima ORGLA02G0287300 N
ORGLA10G0067600 Oryza glaberrima ORGLA10G0067600 N
OGLUM10G07850 Oryza glumaepatula OGLUM10G07850 N
OGLUM02G33770 Oryza glumaepatula OGLUM02G33770 N
BGIOSGA005582 Oryza indica BGIOSGA005582 N
BGIOSGA032814 Oryza indica BGIOSGA032814 N
OMERI02G31750 Oryza meridionalis OMERI02G31750 N
ONIVA02G35790 Oryza nivara ONIVA02G35790 N
ONIVA10G07810 Oryza nivara ONIVA10G07810 N
OPUNC02G30580 Oryza punctata OPUNC02G30580 N
OPUNC03G06240 Oryza punctata OPUNC03G06240 N
OPUNC10G07050 Oryza punctata OPUNC10G07050 N
ORUFI10G08570 Oryza rufipogon ORUFI10G08570 N
ORUFI02G34810 Oryza rufipogon ORUFI02G34810 N
OS10G0376900 Oryza sativa OS10G0376900 N
Pavir.Db01842 Panicum virgatum Pavir.Db01842 N
Pavir.Aa00538 Panicum virgatum Pavir.Aa00538 N
Pavir.Ia02758 Panicum virgatum Pavir.Ia02758 N
Pavir.Ia03109 Panicum virgatum Pavir.Ia03109 N
Pavir.Ia04907 Panicum virgatum Pavir.Ia04907 N
Pavir.Ib02778 Panicum virgatum Pavir.Ib02778 N
Pavir.J40759 Panicum virgatum Pavir.J40759 N
30076.m004456 Ricinus communis 30076.m004456 N
Si038653m.g Setaria italica Si038653m.g N
Si036568m.g Setaria italica Si036568m.g N
Si017701m.g Setaria italica Si017701m.g N
Solyc11g010340.1 Solanum lycopersicum Solyc11g010340.1 N
PGSC0003DMG400016145 Solanum tuberosum PGSC0003DMG400016145 N
Sb04g027280 Sorghum bicolor Sb04g027280 N
Sb0012s004780 Sorghum bicolor Sb0012s004780 N
Sb01g044640 Sorghum bicolor Sb01g044640 N
TCM_005028 Theobroma cacao TCM_005028 N
GRMZM2G008691 Zea mays GRMZM2G008691 N
GRMZM2G045883 Zea mays GRMZM2G045883 N
AC233899.1_FG002 Zea mays AC233899.1_FG002 N