POPTR_0002s12410 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0002s12410 T278216_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.805 0.903
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.805 0.903
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.805 0.903
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.774 0.903
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.768 0.882
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.768 0.882
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.768 0.882
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.743 0.785
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.708 0.839
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.708 0.839
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.708 0.839
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.708 0.839
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.708 0.839
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.666 0.763
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.662 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s12410.1 Myb 30 76
POPTR_0002s12410.1 Myb 82 127

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

329 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010206 Ailuropoda melanoleuca ENSAMEG00000010206 N
Alligator_sinensis_CCG003694.1 Alligator sinensis Alligator_sinensis_CCG003694.1 N
ENSAPLG00000013214 Anas platyrhynchos ENSAPLG00000013214 N
SALL3 Anolis carolinensis ENSACAG00000000478 N
Afo_R009325 Aptenodytes forsteri Afo_R009325 N
ENSP00000299466-D1 Bos grunniens ENSP00000299466-D1 N
Brh_R007854 Buceros rhinoceros Brh_R007854 N
SALL3 Callithrix jacchus ENSCJAG00000007332 N
SALL3 Canis familiaris ENSCAFG00000000013 N
SALL3 Cavia porcellus ENSCPOG00000008546 N
Cmyd_10010411 Chelonia mydas Cmyd_10010411 N
ENSCSAG00000018244 Chlorocebus sabaeus ENSCSAG00000018244 N
sall3b Danio rerio ENSDARG00000057586 N
sall3a Danio rerio ENSDARG00000079613 N
SALL3 Dasypus novemcinctus ENSDNOG00000025483 N
Sall3 Dipodomys ordii ENSDORG00000002702 N
SALL3 Equus caballus ENSECAG00000015414 N
ENSFALG00000013343 Ficedula albicollis ENSFALG00000013343 N
ENSGMOG00000006649 Gadus morhua ENSGMOG00000006649 N
ENSGALG00000012657 Gallus gallus ENSGALG00000012657 N
sall3a Gasterosteus aculeatus ENSGACG00000005503 N
sall1a Gasterosteus aculeatus ENSGACG00000016702 N
Gfo_R000617 Geospiza fortis Gfo_R000617 N
SALL3 Gorilla gorilla ENSGGOG00000008127 N
SALL3 Homo sapiens ENSG00000256463 N
ENSSTOG00000004145 Ictidomys tridecemlineatus ENSSTOG00000004145 N
ENSLOCG00000007831 Lepisosteus oculatus ENSLOCG00000007831 N
ENSLOCG00000007283 Lepisosteus oculatus ENSLOCG00000007283 N
SALL3 Loxodonta africana ENSLAFG00000013521 N
SALL3 Macaca mulatta ENSMMUG00000000286 N
SALL3 Meleagris gallopavo ENSMGAG00000002297 N
SALL3 Monodelphis domestica ENSMODG00000012231 N
ENSMPUG00000016646 Mustela putorius furo ENSMPUG00000016646 N
Sall3 Mus musculus ENSMUSG00000024565 N
Myotis_brandtii_Sall3_10034211 Myotis brandtii Myotis_brandtii_Sall3_10034211 N
SALL3 Myotis lucifugus ENSMLUG00000010582 N
ENSNLEG00000008217 Nomascus leucogenys ENSNLEG00000008217 N
Ogr15828 Ophisaurus gracilis Ogr15828 N
ENSONIG00000002831 Oreochromis niloticus ENSONIG00000002831 N
ENSONIG00000007305 Oreochromis niloticus ENSONIG00000007305 N
SALL1 Ornithorhynchus anatinus ENSOANG00000013399 N
SALL3 Oryctolagus cuniculus ENSOCUG00000029398 N
sall3a Oryzias latipes ENSORLG00000020718 N
sall1a Oryzias latipes ENSORLG00000013827 N
SALL1 Otolemur garnettii ENSOGAG00000027316 N
SALL3 Otolemur garnettii ENSOGAG00000031681 N
ENSOARG00000017583 Ovis aries ENSOARG00000017583 N
ENSOARG00000004353 Ovis aries ENSOARG00000004353 N
SALL3 Pan troglodytes ENSPTRG00000010126 N
ENSPANG00000006485 Papio anubis ENSPANG00000006485 N
ENSPSIG00000008556 Pelodiscus sinensis ENSPSIG00000008556 N
ENSPFOG00000019127 Poecilia formosa ENSPFOG00000019127 N
ENSPFOG00000015799 Poecilia formosa ENSPFOG00000015799 N
Pvit_05136 Pogona vitticeps Pvit_05136 N
ENSPPYG00000009253 Pongo abelii ENSPPYG00000009253 N
SALL3 Procavia capensis ENSPCAG00000006522 N
Sall3 Rattus norvegicus ENSRNOG00000026116 N
Sall1 Rattus norvegicus ENSRNOG00000013907 N
ENSSHAG00000015872 Sarcophilus harrisii ENSSHAG00000015872 N
SALL3 Sus scrofa ENSSSCG00000004858 N
sall1a Takifugu rubripes ENSTRUG00000008950 N
sall1a Tetraodon nigroviridis ENSTNIG00000004257 N
SALL3 Tursiops truncatus ENSTTRG00000004958 N
Tal_R008175 Tyto alba Tal_R008175 N
sall1.L Xenopus laevis XB-GENE-866060 N
XP_002936494 Xenopus tropicalis XP_002936494 N
XP_002936495 Xenopus tropicalis XP_002936495 N
XP_002936493 Xenopus tropicalis XP_002936493 N
sall1 Xenopus tropicalis XB-GENE-491393 N
ENSXMAG00000016273 Xiphophorus maculatus ENSXMAG00000016273 N
ENSXMAG00000009081 Xiphophorus maculatus ENSXMAG00000009081 N