POPTR_0005s12050 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0005s12050 T278280_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.741 0.849
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.741 0.849
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.669 0.753
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.669 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s12050.1 Myb 173 219
POPTR_0005s12050.1 Myb 225 270

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_01474 Ancylostoma ceylanicum ANCCEY_01474 N
ALUE_0001885601 Ascaris lumbricoides ALUE_0001885601 N
ASU_15182 Ascaris suum ASU_15182 N
Bm6550 Brugia malayi Bm6550 N
CBN07630 Caenorhabditis brenneri CBN07630 N
CBG05690 Caenorhabditis briggsae CBG05690 N
dmd-3 Caenorhabditis elegans WBGene00012832 D
CRE06043 Caenorhabditis remanei CRE06043 N
DME_0000028701 Dracunculus medinensis DME_0000028701 N
EEL_0000847601 Elaeophora elaphi EEL_0000847601 N
EVEC_0001283901 Enterobius vermicularis EVEC_0001283901 N
HPLM_0001382501 Haemonchus placei HPLM_0001382501 N
Hba_18486 Heterorhabditis bacteriophora Hba_18486 N
LOAG_13296 Loa loa LOAG_13296 N
WBGene00242840 Onchocerca volvulus WBGene00242840 N
PEQ_0000560001 Parascaris equorum PEQ_0000560001 N
PTRK_0001116100 Parastrongyloides trichosuri PTRK_0001116100 N
RSKR_0000247700 Rhabditophanes kr3021 RSKR_0000247700 N
L889_g14208 Steinernema feltiae L889_g14208 N
L892_g27879 Steinernema scapterisci L892_g27879 I
SPAL_0001355700 Strongyloides papillosus SPAL_0001355700 N
SSTP_0000731600 Strongyloides stercoralis SSTP_0000731600 N
SSTP_0000839900 Strongyloides stercoralis SSTP_0000839900 N
SMUV_0000467601 Syphacia muris SMUV_0000467601 N
SMUV_0001103601 Syphacia muris SMUV_0001103601 N
TCLT_0000242201 Thelazia callipaeda TCLT_0000242201 N
TCNE_0001625401 Toxocara canis TCNE_0001625401 N