POPTR_0009s09890 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0009s09890 T278374_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.780 0.817
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.761 0.817
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.761 0.817
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.752 0.817
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.729 0.774
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.729 0.774
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.729 0.774
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.678 0.753
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.674 0.731
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.674 0.731
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.674 0.731
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.674 0.731
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.674 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s09890.1 Myb 7 53
POPTR_0009s09890.1 Myb 59 104

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_23346 Aegilops tauschii F775_23346 N
WRKY38 Arabidopsis lyrata scaffold_602308.1 I
WRKY38 Arabidopsis thaliana AT5G22570 D
BRADI4G44350 Brachypodium distachyon BRADI4G44350 I
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N
Bra028918 Brassica rapa Bra028918 I
PK10616.1 Cannabis sativa PK10616.1 I
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I
MLOC_68369 Hordeum vulgare MLOC_68369 N
LPERR12G01070 Leersia perrieri LPERR12G01070 I
LPERR11G00960 Leersia perrieri LPERR11G00960 I
LPERR08G11030 Leersia perrieri LPERR08G11030 I
MTR_2g075680 Medicago truncatula MTR_2g075680 I
OBART11G01100 Oryza barthii OBART11G01100 N
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N
ORGLA09G0026100 Oryza glaberrima ORGLA09G0026100 I
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N
BGIOSGA030113 Oryza indica BGIOSGA030113 I
BGIOSGA036757 Oryza indica BGIOSGA036757 N
BGIOSGA034613 Oryza indica BGIOSGA034613 N
OLONG_002978 Oryza longistaminata OLONG_002978 I
OMERI11G01520 Oryza meridionalis OMERI11G01520 N
ONIVA11G01230 Oryza nivara ONIVA11G01230 N
ONIVA11G01050 Oryza nivara ONIVA11G01050 N
ONIVA09G03360 Oryza nivara ONIVA09G03360 I
OPUNC12G00970 Oryza punctata OPUNC12G00970 N
OPUNC11G00970 Oryza punctata OPUNC11G00970 N
OS12G0116600 Oryza sativa OS12G0116600 N
OS11G0117400 Oryza sativa OS11G0117400 N
Pavir.J39511 Panicum virgatum Pavir.J39511 I
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I
Si027360m.g Setaria italica Si027360m.g N
Si025181m.g Setaria italica Si025181m.g I
Si019098m.g Setaria italica Si019098m.g N
Si010832m.g Setaria italica Si010832m.g N
Si010764m.g Setaria italica Si010764m.g N
Sb08g002570 Sorghum bicolor Sb08g002570 N
Sb05g001180 Sorghum bicolor Sb05g001180 N
TCM_019689 Theobroma cacao TCM_019689 I
Traes_5DL_09F1F8F79 Triticum aestivum Traes_5DL_09F1F8F79 N
Traes_5BL_175E7FC38 Triticum aestivum Traes_5BL_175E7FC38 N
TRIUR3_24639 Triticum urartu TRIUR3_24639 N