POPTR_0012s03530 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0012s03530 T278416_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.818 0.848
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.818 0.848
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.818 0.848
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.818 0.848
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.818 0.848
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.816 0.913
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.780 0.826
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.770 0.783
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.770 0.783
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.761 0.826
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.761 0.826
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.761 0.826
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.734 0.761
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.734 0.761
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.688 0.674
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.688 0.674
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.688 0.674
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.665 0.696
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s03530.1 Myb 61 106

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

287 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_010_00154 Aquilegia coerulea Aquca_010_00154 N
fgenesh2_kg.4__2662__AT2G44730.1 Arabidopsis lyrata fgenesh2_kg.4__2662__AT2G44730.1 N
AT2G44730 Arabidopsis thaliana AT2G44730 N
Bostr.25993s0300 Boechera stricta Bostr.25993s0300 N
Bo3g037360 Brassica oleracea Bo3g037360 N
Bo4g023990 Brassica oleracea Bo4g023990 N
Bra000360 Brassica rapa Bra000360 N
PK17306.1 Cannabis sativa PK17306.1 N
Cagra.0239s0022 Capsella grandiflora Cagra.0239s0022 N
Carubv10025047m.g Capsella rubella Carubv10025047m.g N
evm.TU.supercontig_41.83 Carica papaya evm.TU.supercontig_41.83 N
Ca_06795 Cicer arietinum Ca_06795 N
Ca_06067 Cicer arietinum Ca_06067 N
Cla021714 Citrullus lanatus Cla021714 N
Ciclev10020863m.g Citrus clementina Ciclev10020863m.g N
orange1.1g018620m.g Citrus sinensis orange1.1g018620m.g N
Cucsa.256710 Cucumis sativus Cucsa.256710 N
Thhalv10001488m.g Eutrema salsugineum Thhalv10001488m.g N
gene05318-v1.0-hybrid Fragaria vesca gene05318-v1.0-hybrid N
GLYMA08G05630 Glycine max GLYMA08G05630 N
GLYMA09G38050 Glycine max GLYMA09G38050 N
GLYMA18G48343 Glycine max GLYMA18G48343 N
GLYMA19G29640 Glycine max GLYMA19G29640 N
Gorai.004G167100 Gossypium raimondii Gorai.004G167100 N
chr4.CM0739.40.nd Lotus japonicus chr4.CM0739.40.nd N
MDP0000557282 Malus domestica MDP0000557282 N
cassava12982.valid.m1 Manihot esculenta cassava12982.valid.m1 N
MTR_4g117990 Medicago truncatula MTR_4g117990 N
MTR_7g081190 Medicago truncatula MTR_7g081190 N
mgf005560m Mimulus guttatus mgf005560m N
GSMUA_Achr11G17710_001 Musa acuminata GSMUA_Achr11G17710_001 N
POPTR_0002s14030 Populus trichocarpa POPTR_0002s14030 N
POPTR_0014s05010 Populus trichocarpa POPTR_0014s05010 N
29709.m001180 Ricinus communis 29709.m001180 N
SapurV1A.0033s0070 Salix purpurea SapurV1A.0033s0070 N
TCM_005773 Theobroma cacao TCM_005773 N
VIT_15s0021g01220 Vitis vinifera VIT_15s0021g01220 N
GRMZM2G379179 Zea mays GRMZM2G379179 N
GRMZM5G850092 Zea mays GRMZM5G850092 N