30174.m008717 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 30174.m008717 T283912_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.721 0.813
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.721 0.813
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.721 0.813
PK19621.1
M01280_2.00 		Cannabis sativa
NNTTATCYN
NRGATAANN		 PBM
Lambert et al.(2019)
pTH10140 		0.707 0.813
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30174.m008717 Myb 133 178

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.717
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.721
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.710
PK19621.1 Cannabis sativa PK19621.1 D 0.707
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.682
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.682
Ca_06612 Cicer arietinum Ca_06612 I 0.748
Cla019277 Citrullus lanatus Cla019277 I 0.684
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.804
Cucsa.198920 Cucumis sativus Cucsa.198920 I 0.684
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.678
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.710
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.702
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.685
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.737
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.680
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.757
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.770
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.699
MDP0000853568 Malus domestica MDP0000853568 I 0.701
cassava2458.valid.m1 Manihot esculenta cassava2458.valid.m1 N 0.668
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.731
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.680
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.745
Pm030197 Prunus mume Pm030197 I 0.745
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.674
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.745
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.662
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.669
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.763
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.727
TCM_012262 Theobroma cacao TCM_012262 I 0.764
VIT_17s0000g04130 Vitis vinifera VIT_17s0000g04130 I 0.668