Cucsa.349220 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.349220 T284537_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.820 0.957
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.820 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.349220.1 Myb 40 107

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00175 Aquilegia coerulea Aquca_014_00175 N 0.000
evm.TU.supercontig_36.32 Carica papaya evm.TU.supercontig_36.32 N 0.000
Ca_26279 Cicer arietinum Ca_26279 N 0.000
Ciclev10000940m.g Citrus clementina Ciclev10000940m.g N 0.000
orange1.1g011012m.g Citrus sinensis orange1.1g011012m.g N 0.000
Eucgr.L03490 Eucalyptus grandis Eucgr.L03490 N 0.000
gene11137-v1.0-hybrid Fragaria vesca gene11137-v1.0-hybrid N 0.000
GLYMA06G11610 Glycine max GLYMA06G11610 N 0.000
GLYMA04G43090 Glycine max GLYMA04G43090 N 0.000
Gorai.010G048800 Gossypium raimondii Gorai.010G048800 N 0.000
Gorai.009G244200 Gossypium raimondii Gorai.009G244200 N 0.000
Lus10028056.g Linum usitatissimum Lus10028056.g N 0.000
Lus10008316.g Linum usitatissimum Lus10008316.g N 0.000
LjT26J05.10.nc Lotus japonicus LjT26J05.10.nc N 0.000
LjT15C06.70.nc Lotus japonicus LjT15C06.70.nc N 0.000
MDP0000884524 Malus domestica MDP0000884524 N 0.000
MDP0000319342 Malus domestica MDP0000319342 N 0.000
cassava32027.m1 Manihot esculenta cassava32027.m1 N 0.000
cassava44367.m1 Manihot esculenta cassava44367.m1 N 0.000
MTR_3g072710 Medicago truncatula MTR_3g072710 N 0.000
POPTR_0002s08660 Populus trichocarpa POPTR_0002s08660 N 0.000
POPTR_0005s15900 Populus trichocarpa POPTR_0005s15900 N 0.000
Pm004863 Prunus mume Pm004863 N 0.000
PRUPE_ppa018977mg Prunus persica PRUPE_ppa018977mg N 0.000
29908.m006159 Ricinus communis 29908.m006159 N 0.000
SapurV1A.0105s0110 Salix purpurea SapurV1A.0105s0110 N 0.000
Solyc11g013150.1 Solanum lycopersicum Solyc11g013150.1 N 0.000
PGSC0003DMG400012071 Solanum tuberosum PGSC0003DMG400012071 N 0.000
TCM_035069 Theobroma cacao TCM_035069 N 0.000
VIT_18s0001g03310 Vitis vinifera VIT_18s0001g03310 N 0.000