Eucgr.B03985 (Eucalyptus grandis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Eucgr.B03985 T286780_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.798 0.892
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.749 0.806
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.749 0.806
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.712 0.763
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.712 0.763
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.686 0.828
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.685 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B03985.1 Myb 24 71
Eucgr.B03985.1 Myb 77 122

Links

Other Myb/SANT family TFs
Other Eucalyptus grandis TFs

529 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g05112 Acanthocheilonema viteae nAv.1.0.1.g05112 N
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I
ANCDUO_02619 Ancylostoma duodenale ANCDUO_02619 N
ASU_06962 Ascaris suum ASU_06962 N
Bm7459 Brugia malayi Bm7459 N
BTMF_0000953701 Brugia timori BTMF_0000953701 N
BXY_1512700 Bursaphelenchus xylophilus BXY_1512700 N
CBG06922 Caenorhabditis briggsae CBG06922 N
sma-2 Caenorhabditis elegans WBGene00004856 N
CRE15772 Caenorhabditis remanei CRE15772 N
DME_0000390001 Dracunculus medinensis DME_0000390001 N
EEL_0000068901 Elaeophora elaphi EEL_0000068901 N
EVEC_0000636701 Enterobius vermicularis EVEC_0000636701 N
HCOI00251100 Haemonchus contortus HCOI00251100 N
HCOI01543700 Haemonchus contortus HCOI01543700 N
SMAD3 Homo sapiens ENSG00000166949 D
nLs.2.1.2.g02003 Litomosoides sigmodontis nLs.2.1.2.g02003 N
LOAG_01471 Loa loa LOAG_01471 N
ENSMEUG00000006332 Macropus eugenii ENSMEUG00000006332 I
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I
maker-nMf.1.1.scaf00076-augustus-gene-0.21 Meloidogyne floridensis maker-nMf.1.1.scaf00076-augustus-gene-0.21 N
Minc06478 Meloidogyne incognita Minc06478 N
NBR_0000522801 Nippostrongylus brasiliensis NBR_0000522801 I
NBR_0000271401 Nippostrongylus brasiliensis NBR_0000271401 N
OFLC_0000052301 Onchocerca flexuosa OFLC_0000052301 N
nOo.2.0.1.g00974 Onchocerca ochengi nOo.2.0.1.g00974 N
WBGene00245189 Onchocerca volvulus WBGene00245189 N
PTRK_0000297300 Parastrongyloides trichosuri PTRK_0000297300 N
RSKR_0000082500 Rhabditophanes kr3021 RSKR_0000082500 N
L596_g26009 Steinernema carpocapsae L596_g26009 N
L898_g14583 Steinernema monticolum L898_g14583 N
L892_g4529 Steinernema scapterisci L892_g4529 N
SPAL_0001290200 Strongyloides papillosus SPAL_0001290200 N
SSTP_0000571600 Strongyloides stercoralis SSTP_0000571600 N
SVE_0161800 Strongyloides venezuelensis SVE_0161800 N
SMUV_0000477801 Syphacia muris SMUV_0000477801 N
TCLT_0000791701 Thelazia callipaeda TCLT_0000791701 N
WUBG_02400 Wuchereria bancrofti WUBG_02400 N