MDP0000795432 (Malus domestica)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 MDP0000795432 T288704_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.902 0.957
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.801 0.848
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.801 0.848
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.801 0.848
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.801 0.848
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.801 0.848
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.793 0.826
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.793 0.826
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.793 0.826
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.782 0.826
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.773 0.783
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.773 0.783
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.737 0.783
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.737 0.783
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.706 0.652
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.706 0.652
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.706 0.652
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.699 0.674
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.699 0.674
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.699 0.674
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.699 0.652
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.699 0.652
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.699 0.652
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.689 0.630
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.689 0.630
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.689 0.630
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.683 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000795432 Myb 54 99

Links

Other Myb/SANT family TFs
Other Malus domestica TFs

481 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_03250 Aegilops tauschii F775_03250 N
fgenesh2_kg.3__2706__AT3G24880.1 Arabidopsis lyrata fgenesh2_kg.3__2706__AT3G24880.1 N
EAF1A Arabidopsis thaliana AT3G24880 N
EAF1B Arabidopsis thaliana AT3G24870 N
Bostr.19424s0133 Boechera stricta Bostr.19424s0133 N
BRADI2G14372 Brachypodium distachyon BRADI2G14372 N
BRADI2G41720 Brachypodium distachyon BRADI2G41720 N
PK23540.1 Cannabis sativa PK23540.1 N
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N
Cla015187 Citrullus lanatus Cla015187 N
Ciclev10018446m.g Citrus clementina Ciclev10018446m.g N
orange1.1g000147m.g Citrus sinensis orange1.1g000147m.g N
Cucsa.078210 Cucumis sativus Cucsa.078210 N
Eucgr.H00795 Eucalyptus grandis Eucgr.H00795 N
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N
GLYMA08G46710 Glycine max GLYMA08G46710 N
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N
Gorai.004G226000 Gossypium raimondii Gorai.004G226000 N
MLOC_60761 Hordeum vulgare MLOC_60761 N
LPERR11G18970 Leersia perrieri LPERR11G18970 N
chr1.LjT36F23.70.nd Lotus japonicus chr1.LjT36F23.70.nd N
MDP0000250529 Malus domestica MDP0000250529 N
MDP0000155726 Malus domestica MDP0000155726 N
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N
MTR_7g056603 Medicago truncatula MTR_7g056603 N
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N
OBART08G04660 Oryza barthii OBART08G04660 N
OB01G30180 Oryza brachyantha OB01G30180 N
OGLUM08G04910 Oryza glumaepatula OGLUM08G04910 N
BGIOSGA027556 Oryza indica BGIOSGA027556 N
OLONG_015531 Oryza longistaminata OLONG_015531 N
OMERI08G04670 Oryza meridionalis OMERI08G04670 N
ONIVA08G04510 Oryza nivara ONIVA08G04510 N
OPUNC08G04510 Oryza punctata OPUNC08G04510 N
ORUFI08G05170 Oryza rufipogon ORUFI08G05170 N
OS08G0177300 Oryza sativa OS08G0177300 N
Pavir.J18859 Panicum virgatum Pavir.J18859 N
Pavir.J03231 Panicum virgatum Pavir.J03231 N
Pavir.J00429 Panicum virgatum Pavir.J00429 N
POPTR_0002s24490 Populus trichocarpa POPTR_0002s24490 N
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N
SapurV1A.0135s0340 Salix purpurea SapurV1A.0135s0340 N
Si020947m.g Setaria italica Si020947m.g N
Si000015m.g Setaria italica Si000015m.g N
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N
Sb03g025920 Sorghum bicolor Sb03g025920 N
TCM_002924 Theobroma cacao TCM_002924 N
Traes_1DL_7773A9BFB Triticum aestivum Traes_1DL_7773A9BFB N
Traes_3AL_06889C77D Triticum aestivum Traes_3AL_06889C77D N
Traes_3DL_FC1A52B36 Triticum aestivum Traes_3DL_FC1A52B36 N
TRIUR3_17785 Triticum urartu TRIUR3_17785 N
TRIUR3_27363 Triticum urartu TRIUR3_27363 N
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N
GRMZM2G350684 Zea mays GRMZM2G350684 N
GRMZM2G018048 Zea mays GRMZM2G018048 N