Pavir.J01189 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J01189 T289306_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8RUX5_MAIZE
M11060_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MRP1_Q2 		0.661 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01189.1.p Myb 139 185

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_03992 Cicer arietinum Ca_03992 N 0.000
Cla004331 Citrullus lanatus Cla004331 N 0.000
Cucsa.032230 Cucumis sativus Cucsa.032230 N 0.000
GLYMA04G41320 Glycine max GLYMA04G41320 N 0.000
GLYMA06G13540 Glycine max GLYMA06G13540 N 0.000
Gorai.003G121600 Gossypium raimondii Gorai.003G121600 N 0.000
chr1.CM0033.320.nc Lotus japonicus chr1.CM0033.320.nc N 0.000
chr1.CM0033.390.nc Lotus japonicus chr1.CM0033.390.nc N 0.000
chr4.CM0131.310.nd Lotus japonicus chr4.CM0131.310.nd N 0.000
LjSGA_030914.1 Lotus japonicus LjSGA_030914.1 N 0.000
TCM_015430 Theobroma cacao TCM_015430 N 0.000