chr1.CM0098.390.nd (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 chr1.CM0098.390.nd T290649_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q5IWM2_WHEAT
M11059_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB80_01 		0.858 0.915
PHL7
M02292_2.00 		Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN		 PBM
Weirauch et al.(2014)
pTH7253 		0.835 0.894
PK10342.1
M02351_2.00 		Cannabis sativa
WAGATKCS
SGMATCTW		 PBM
Weirauch et al.(2014)
pTH9489 		0.835 0.894
PHL7
M07040_2.00 		Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH		 Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a 		0.835 0.894
PHL7
M07041_2.00 		Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB		 Dap-seq
OMalley et al.(2016)
At2g01060_col 		0.835 0.894
UNE16
M01270_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Lambert et al.(2019)
pTH9967 		0.767 0.787
AT3G24120
M00729_2.00 		Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN		 PBM
Chang et al.(2013)
pTH7086 		0.733 0.766
AT3G24120
M07085_2.00 		Arabidopsis thaliana
HAKATTCB
VGAATMTD		 Dap-seq
OMalley et al.(2016)
At3g24120_col_a 		0.733 0.766
AT3G24120
M07086_2.00 		Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN		 Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a 		0.733 0.766
MYR1
M02309_2.00 		Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN		 PBM
Weirauch et al.(2014)
pTH8859 		0.703 0.723
MYR2
M02294_2.00 		Arabidopsis thaliana
NKATDCBNN
NNVGHATMN		 PBM
Weirauch et al.(2014)
pTH7097 		0.697 0.702
MYR2
M07063_2.00 		Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN		 Dap-seq
OMalley et al.(2016)
At3g04030_col_a 		0.697 0.702
MYR2
M07064_2.00 		Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB		 Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a 		0.697 0.702
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.696 0.702
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.696 0.702
PHL12
M01077_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Sullivan et al.(2014)
pTH7098 		0.691 0.766
PHL12
M07079_2.00 		Arabidopsis thaliana
RGAATATTCYYTWN
NWARRGAATATTCY		 Dap-seq
OMalley et al.(2016)
At3g12730_col_a 		0.691 0.766
PHL12
M07080_2.00 		Arabidopsis thaliana
NNRAAKATTCBHHN
NDDVGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a 		0.691 0.766
PHL11
M07134_2.00 		Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
AT5G45580_col_a 		0.684 0.787
PHL11
M07135_2.00 		Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN		 Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a 		0.684 0.787
AT2G20400
M07046_2.00 		Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN		 Dap-seq
OMalley et al.(2016)
AT2G20400_col_a 		0.665 0.745
AT2G20400
M07047_2.00 		Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY		 Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a 		0.665 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0098.390.nd Myb 54 105

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

843 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I
LFY Arabidopsis thaliana AT5G61850 D
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I
Bo2g161690 Brassica oleracea Bo2g161690 I
Bo3g109270 Brassica oleracea Bo3g109270 I
Bra019619 Brassica rapa Bra019619 I
Bra029305 Brassica rapa Bra029305 I
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I
Carubv10028602m.g Capsella rubella Carubv10028602m.g I
Ca_01386 Cicer arietinum Ca_01386 I
Cla019619 Citrullus lanatus Cla019619 I
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I
Cucsa.156880 Cucumis sativus Cucsa.156880 I
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I
GLYMA06G17170 Glycine max GLYMA06G17170 I
GLYMA04G37900 Glycine max GLYMA04G37900 I
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I
LPERR04G19570 Leersia perrieri LPERR04G19570 I
Lus10022427.g Linum usitatissimum Lus10022427.g I
Lus10016732.g Linum usitatissimum Lus10016732.g I
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I
cassava40548.m1 Manihot esculenta cassava40548.m1 I
cassava19992.m1 Manihot esculenta cassava19992.m1 I
MTR_3g098560 Medicago truncatula MTR_3g098560 I
mgf020579m Mimulus guttatus mgf020579m I
mgf013601m Mimulus guttatus mgf013601m I
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I
OBART04G23870 Oryza barthii OBART04G23870 I
OB04G30790 Oryza brachyantha OB04G30790 I
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I
OLONG_021167 Oryza longistaminata OLONG_021167 I
OMERI04G19760 Oryza meridionalis OMERI04G19760 I
ONIVA04G23030 Oryza nivara ONIVA04G23030 I
OPUNC04G21410 Oryza punctata OPUNC04G21410 I
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I
FL Oryza sativa OS04G0598300 I
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I
FL Populus trichocarpa POPTR_0015s11820 I
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I
30147.m014401 Ricinus communis 30147.m014401 I
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I
Si011756m.g Setaria italica Si011756m.g I
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I
Sb06g027340 Sorghum bicolor Sb06g027340 I
TCM_014768 Theobroma cacao TCM_014768 I
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I
LFY Vitis vinifera VIT_17s0000g00150 I
GRMZM2G180190 Zea mays GRMZM2G180190 I
GRMZM2G098813 Zea mays GRMZM2G098813 I