Bra029844 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra029844 T292650_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.959 0.974
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.959 0.974
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029844.1-P NAC/NAM 31 157

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.959
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.959
ANAC052 Arabidopsis thaliana AT3G10490 I 0.944
ANAC050 Arabidopsis thaliana AT3G10480 D 0.959
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.959
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.959
Bo3g062710 Brassica oleracea Bo3g062710 I 0.956
Bo3g062700 Brassica oleracea Bo3g062700 I 0.955
Bo1g143840 Brassica oleracea Bo1g143840 I 0.944
Bo1g143850 Brassica oleracea Bo1g143850 I 0.935
Bo5g137360 Brassica oleracea Bo5g137360 I 0.973
Bra034119 Brassica rapa Bra034119 I 0.944
Bra034118 Brassica rapa Bra034118 I 0.935
Bra001366 Brassica rapa Bra001366 I 0.963
Bra001365 Brassica rapa Bra001365 I 0.955
PK06477.1 Cannabis sativa PK06477.1 I 0.883
Cagra.9217s0020 Capsella grandiflora Cagra.9217s0020 I 0.888
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.959
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.957
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.959
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.957
Carubv10003768m.g Capsella rubella Carubv10003768m.g I 0.875
Ca_08371 Cicer arietinum Ca_08371 I 0.890
Cla020838 Citrullus lanatus Cla020838 I 0.878
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I 0.933
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I 0.933
Cucsa.308760 Cucumis sativus Cucsa.308760 I 0.876
Eucgr.G02740 Eucalyptus grandis Eucgr.G02740 N 0.905
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.957
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.957
gene23561-v1.0-hybrid Fragaria vesca gene23561-v1.0-hybrid I 0.917
GLYMA10G34130 Glycine max GLYMA10G34130 I 0.890
GLYMA20G33430 Glycine max GLYMA20G33430 I 0.890
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I 0.929
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.932
Gorai.011G234200 Gossypium raimondii Gorai.011G234200 I 0.899
Lus10038670.g Linum usitatissimum Lus10038670.g I 0.925
Lus10037939.g Linum usitatissimum Lus10037939.g I 0.925
Lus10023537.g Linum usitatissimum Lus10023537.g I 0.883
chr5.CM0909.750.nc Lotus japonicus chr5.CM0909.750.nc I 0.887
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I 0.925
MTR_1g090720 Medicago truncatula MTR_1g090720 I 0.887
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I 0.871
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I 0.871
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I 0.920
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.919
Solyc05g055480.2 Solanum lycopersicum Solyc05g055480.2 I 0.875
PGSC0003DMG401023373 Solanum tuberosum PGSC0003DMG401023373 I 0.877
TCM_043357 Theobroma cacao TCM_043357 I 0.921
VIT_13s0019g05230 Vitis vinifera VIT_13s0019g05230 I 0.882
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.879
GRMZM2G125777 Zea mays GRMZM2G125777 I 0.913