Pavir.Ab03009 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ab03009 T298759_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.885 0.702
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.885 0.702
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab03009.1.p NAC/NAM 20 155

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I
GPRI1 Arabidopsis thaliana AT2G20570 D
GLK2 Arabidopsis thaliana AT5G44190 I
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I
Bra033726 Brassica rapa Bra033726 I
Bra036015 Brassica rapa Bra036015 I
PK19826.1 Cannabis sativa PK19826.1 I
PK27491.1 Cannabis sativa PK27491.1 I
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I
Carubv10014114m.g Capsella rubella Carubv10014114m.g I
Carubv10026528m.g Capsella rubella Carubv10026528m.g I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
Ca_11268 Cicer arietinum Ca_11268 I
Ca_09080 Cicer arietinum Ca_09080 I
Ca_02452 Cicer arietinum Ca_02452 I
Cla008926 Citrullus lanatus Cla008926 I
Cla003791 Citrullus lanatus Cla003791 I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
Cucsa.087530 Cucumis sativus Cucsa.087530 I
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
GLYMA13G37010 Glycine max GLYMA13G37010 I
GLYMA12G33430 Glycine max GLYMA12G33430 I
GLYMA12G13430 Glycine max GLYMA12G13430 I
GLYMA06G44330 Glycine max GLYMA06G44330 I
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I
Lus10005340.g Linum usitatissimum Lus10005340.g I
Lus10018649.g Linum usitatissimum Lus10018649.g I
Lus10033642.g Linum usitatissimum Lus10033642.g I
Lus10039883.g Linum usitatissimum Lus10039883.g I
Lus10041020.g Linum usitatissimum Lus10041020.g I
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I
MDP0000526864 Malus domestica MDP0000526864 I
MDP0000225179 Malus domestica MDP0000225179 I
cassava9823.m1 Manihot esculenta cassava9823.m1 I
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I
MTR_4g078810 Medicago truncatula MTR_4g078810 I
MTR_2g090675 Medicago truncatula MTR_2g090675 I
mgf007181m Mimulus guttatus mgf007181m I
mgf004257m Mimulus guttatus mgf004257m I
mgf012846m Mimulus guttatus mgf012846m I
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I
Pm014733 Prunus mume Pm014733 I
Pm014123 Prunus mume Pm014123 I
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
29983.m003131 Ricinus communis 29983.m003131 I
29848.m004559 Ricinus communis 29848.m004559 I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I
TCM_008193 Theobroma cacao TCM_008193 I
GPRI1 Vitis vinifera VIT_12s0028g03100 I