CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10001986m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10001986m.g
T289932_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GPRI1
M00874_2.00
Arabidopsis thaliana
NNDATHN
NDATHNN
PBM
Franco-Zorrilla et al.(2014)
GLK1
0.859
0.957
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10001986m
Myb
170
220
KVDWTAELHRRFVEAVEQLGVEKAVPSRILELMGVHCLTRHNVASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GPRI1
Arabidopsis thaliana
AT2G20570
D
0.859
GPRI1
Arabidopsis lyrata
fgenesh2_kg.3__3588__AT2G20570.1
I
0.859
Cla003791
Citrullus lanatus
Cla003791
I
0.859
Cucsa.087530
Cucumis sativus
Cucsa.087530
I
0.859
Bostr.7903s0106
Boechera stricta
Bostr.7903s0106
I
0.859
Cagra.2516s0014
Capsella grandiflora
Cagra.2516s0014
I
0.859
Carubv10014114m.g
Capsella rubella
Carubv10014114m.g
I
0.859
Lus10018649.g
Linum usitatissimum
Lus10018649.g
I
0.859
Lus10033642.g
Linum usitatissimum
Lus10033642.g
I
0.859
Lus10039883.g
Linum usitatissimum
Lus10039883.g
I
0.859
cassava9823.m1
Manihot esculenta
cassava9823.m1
I
0.854
AMTR_s00058p00133630
Amborella trichopoda
AMTR_s00058p00133630
I
0.839
POPTR_0007s01230
Populus trichocarpa
POPTR_0007s01230
I
0.839
POPTR_0017s04720
Populus trichocarpa
POPTR_0017s04720
I
0.839
PRUPE_ppa014599mg
Prunus persica
PRUPE_ppa014599mg
I
0.839
TCM_008193
Theobroma cacao
TCM_008193
I
0.839
Pm014123
Prunus mume
Pm014123
I
0.839
29983.m003131
Ricinus communis
29983.m003131
I
0.839
cassava43649.valid.m1
Manihot esculenta
cassava43649.valid.m1
I
0.839
cassava43650.valid.m1
Manihot esculenta
cassava43650.valid.m1
I
0.839
Ciclev10015266m.g
Citrus clementina
Ciclev10015266m.g
I
0.839
gene17750-v1.0-hybrid
Fragaria vesca
gene17750-v1.0-hybrid
I
0.839
Gorai.002G020300
Gossypium raimondii
Gorai.002G020300
I
0.839
Gorai.012G126600
Gossypium raimondii
Gorai.012G126600
I
0.839
MDP0000225179
Malus domestica
MDP0000225179
I
0.839
MDP0000526864
Malus domestica
MDP0000526864
I
0.839
orange1.1g013528m.g
Citrus sinensis
orange1.1g013528m.g
I
0.839
SapurV1A.0118s0260
Salix purpurea
SapurV1A.0118s0260
I
0.839
SapurV1A.0693s0070
Salix purpurea
SapurV1A.0693s0070
I
0.839
SapurV1A.1950s0030
Salix purpurea
SapurV1A.1950s0030
I
0.839
PK27491.1
Cannabis sativa
PK27491.1
I
0.839
GLYMA06G44330
Glycine max
GLYMA06G44330
I
0.821
GLYMA12G13430
Glycine max
GLYMA12G13430
I
0.821
GLYMA12G33430
Glycine max
GLYMA12G33430
I
0.821
GLYMA13G37010
Glycine max
GLYMA13G37010
I
0.821
MTR_2g090675
Medicago truncatula
MTR_2g090675
I
0.821
PGSC0003DMG400009378
Solanum tuberosum
PGSC0003DMG400009378
I
0.821
Solyc07g053630.2
Solanum lycopersicum
Solyc07g053630.2
I
0.821
GPRI1
Vitis vinifera
VIT_12s0028g03100
I
0.821
Ca_02452
Cicer arietinum
Ca_02452
I
0.821
Ca_11268
Cicer arietinum
Ca_11268
I
0.821
mgf004257m
Mimulus guttatus
mgf004257m
I
0.818
mgf014879m
Mimulus guttatus
mgf014879m
I
0.813
MTR_4g078810
Medicago truncatula
MTR_4g078810
I
0.810
PDK_20s1662851g001
Phoenix dactylifera
PDK_20s1662851g001
I
0.806
chr3.CM0160.680.nd
Lotus japonicus
chr3.CM0160.680.nd
I
0.800
Bo7g003410
Brassica oleracea
Bo7g003410
I
0.786
Bo8g102300
Brassica oleracea
Bo8g102300
I
0.786
Bra031129
Brassica rapa
Bra031129
I
0.786
Eucgr.K01056
Eucalyptus grandis
Eucgr.K01056
I
0.777
mgf007181m
Mimulus guttatus
mgf007181m
I
0.772
mgf012846m
Mimulus guttatus
mgf012846m
I
0.772
GSMUA_Achr2G15250_001
Musa acuminata
GSMUA_Achr2G15250_001
I
0.770
estExt_gwp_gw1.C_310256
Physcomitrella patens
estExt_gwp_gw1.C_310256
I
0.759
fgenesh1_pm.scaffold_311000005
Physcomitrella patens
fgenesh1_pm.scaffold_311000005
I
0.759
GSMUA_Achr10G26160_001
Musa acuminata
GSMUA_Achr10G26160_001
I
0.750
GSMUA_Achr7G11040_001
Musa acuminata
GSMUA_Achr7G11040_001
I
0.750
LPERR01G08320
Leersia perrieri
LPERR01G08320
I
0.750
OGLUM01G10130
Oryza glumaepatula
OGLUM01G10130
I
0.750
OMERI01G08840
Oryza meridionalis
OMERI01G08840
I
0.750
ONIVA01G11450
Oryza nivara
ONIVA01G11450
I
0.750
OPUNC01G08680
Oryza punctata
OPUNC01G08680
I
0.750
ORUFI01G09620
Oryza rufipogon
ORUFI01G09620
I
0.750
GLK2
Oryza sativa
OS01G0239000
I
0.750
Aquca_051_00026
Aquilegia coerulea
Aquca_051_00026
I
0.750
Eucgr.A01857
Eucalyptus grandis
Eucgr.A01857
I
0.750
Gorai.008G155000
Gossypium raimondii
Gorai.008G155000
I
0.750
GLK2
Arabidopsis thaliana
AT5G44190
I
0.742
fgenesh2_kg.8__391__AT5G44190.1
Arabidopsis lyrata
fgenesh2_kg.8__391__AT5G44190.1
I
0.742
Bostr.3148s0040
Boechera stricta
Bostr.3148s0040
I
0.742
Cagra.0381s0008
Capsella grandiflora
Cagra.0381s0008
I
0.742
Carubv10026528m.g
Capsella rubella
Carubv10026528m.g
I
0.742
Thhalv10003223m.g
Eutrema salsugineum
Thhalv10003223m.g
I
0.742
BRADI2G08287
Brachypodium distachyon
BRADI2G08287
I
0.738
TRAES3BF062500050CFD_g
Triticum aestivum
TRAES3BF062500050CFD_g
I
0.738
GRMZM2G087804
Zea mays
GRMZM2G087804
I
0.732
Sb03g000400
Sorghum bicolor
Sb03g000400
I
0.732
Pavir.Eb00063
Panicum virgatum
Pavir.Eb00063
I
0.732
Bra036482
Brassica rapa
Bra036482
I
0.726
Pavir.Ea00014
Panicum virgatum
Pavir.Ea00014
I
0.724
BGIOSGA022875
Oryza indica
BGIOSGA022875
I
0.720
BRADI1G43710
Brachypodium distachyon
BRADI1G43710
I
0.720
F775_20285
Aegilops tauschii
F775_20285
I
0.720
LPERR06G12880
Leersia perrieri
LPERR06G12880
I
0.720
MLOC_43537
Hordeum vulgare
MLOC_43537
I
0.720
OB06G22250
Oryza brachyantha
OB06G22250
I
0.720
OBART03G02540
Oryza barthii
OBART03G02540
I
0.720
OGLUM06G15080
Oryza glumaepatula
OGLUM06G15080
I
0.720
OMERI06G15340
Oryza meridionalis
OMERI06G15340
I
0.720
ONIVA06G16920
Oryza nivara
ONIVA06G16920
I
0.720
OPUNC06G13180
Oryza punctata
OPUNC06G13180
I
0.720
ORGLA06G0126200
Oryza glaberrima
ORGLA06G0126200
I
0.720
ORUFI06G15000
Oryza rufipogon
ORUFI06G15000
I
0.720
GLK1
Oryza sativa
OS06G0348800
I
0.720
Sb10g008400
Sorghum bicolor
Sb10g008400
I
0.720
Si001336m.g
Setaria italica
Si001336m.g
I
0.720
Si006400m.g
Setaria italica
Si006400m.g
I
0.720
Traes_7DL_58DDB90E3
Triticum aestivum
Traes_7DL_58DDB90E3
I
0.720
Pavir.Db01285
Panicum virgatum
Pavir.Db01285
I
0.720
GSMUA_Achr6G05850_001
Musa acuminata
GSMUA_Achr6G05850_001
I
0.719
BGIOSGA002040
Oryza indica
BGIOSGA002040
I
0.717
MLOC_65876
Hordeum vulgare
MLOC_65876
I
0.717
ORGLA01G0079000
Oryza glaberrima
ORGLA01G0079000
I
0.717
PDK_20s1585631g001
Phoenix dactylifera
PDK_20s1585631g001
I
0.713
Lus10011044.g
Linum usitatissimum
Lus10011044.g
I
0.698
OB01G18980
Oryza brachyantha
OB01G18980
I
0.697
Aquca_044_00072
Aquilegia coerulea
Aquca_044_00072
I
0.687
Bo7g067200
Brassica oleracea
Bo7g067200
I
0.680
Bra033726
Brassica rapa
Bra033726
I
0.680
TRIUR3_15856
Triticum urartu
TRIUR3_15856
I
0.667
Pavir.J11422
Panicum virgatum
Pavir.J11422
I
0.667
Cla008926
Citrullus lanatus
Cla008926
I
0.664
Cucsa.321580
Cucumis sativus
Cucsa.321580
I
0.664
cassava2466.valid.m1
Manihot esculenta
cassava2466.valid.m1
I
0.662