ENSGMOG00000002650 (Gadus morhua)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSGMOG00000002650 T303416_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rarb
M02401_2.00 		Mus musculus
NRRGGTCAHN
NDTGACCYYN		 PBM
Weirauch et al.(2014)
pTH2804 		0.450 1.000
Rara
M00185_2.00 		Mus musculus
NRGGTCAN
NTGACCYN		 PBM
Badis et al.(2009)
Rara_1051 		0.450 1.000
RARA
M03369_2.00 		Homo sapiens
RRAGGTCAWBWRRGGTCA
TGACCYYWVWTGACCTYY		 SELEX
Jolma et al.(2013)
RARA_1 		0.450 1.000
RARA
M03370_2.00 		Homo sapiens
RAGGTCAAAAGGTCAWKB
VMWTGACCTTTTGACCTY		 SELEX
Jolma et al.(2013)
RARA_2 		0.450 1.000
RARA
M03371_2.00 		Homo sapiens
AGGTCAHNYWRAGGTCA
TGACCTYWRNDTGACCT		 SELEX
Jolma et al.(2013)
RARA_3 		0.450 1.000
RARA
M03372_2.00 		Homo sapiens
ARGGTCAAAAGGTCA
TGACCTTTTGACCYT		 SELEX
Jolma et al.(2013)
RARA_4 		0.450 1.000
RARA
M03373_2.00 		Homo sapiens
WRRGGTCAHSHRRGGTCA
TGACCYYDSDTGACCYYW		 SELEX
Jolma et al.(2013)
RARA_5 		0.450 1.000
RARA
M03374_2.00 		Homo sapiens
AGGTCAWNNARAGGTCA
TGACCTYTNNWTGACCT		 SELEX
Jolma et al.(2013)
RARA_6 		0.450 1.000
RARB
M03355_2.00 		Homo sapiens
AAAGGTCAARAGGTCA
TGACCTYTTGACCTTT		 SELEX
Jolma et al.(2013)
RARB_1 		0.450 1.000
Rara
M03432_2.00 		Mus musculus
AAAGGTCAHBVRAGGTCA
TGACCTYBVDTGACCTTT		 SELEX
Jolma et al.(2013)
Rara_1 		0.450 1.000
Rara
M03433_2.00 		Mus musculus
AGGTCAHNHAAAGGTCA
TGACCTTTDNDTGACCT		 SELEX
Jolma et al.(2013)
Rara_2 		0.450 1.000
Rara
M03434_2.00 		Mus musculus
RAGGTCAAAAGGTCA
TGACCTTTTGACCTY		 SELEX
Jolma et al.(2013)
Rara_3 		0.450 1.000
Rarb
M03423_2.00 		Mus musculus
WAAGGTCAAAAGGTCA
TGACCTTTTGACCTTW		 SELEX
Jolma et al.(2013)
Rarb_1 		0.450 1.000
Rarb
M03424_2.00 		Mus musculus
RRAGGTCANBWRAGGTCA
TGACCTYWVNTGACCTYY		 SELEX
Jolma et al.(2013)
Rarb_2 		0.450 1.000
Rarb
M03425_2.00 		Mus musculus
AGGTCAHVBWRAGGTCA
TGACCTYWVBDTGACCT		 SELEX
Jolma et al.(2013)
Rarb_3 		0.450 1.000
RARA
M05607_2.00 		Homo sapiens
NVGGKCANNRGGKCAN
NTGMCCYNNTGMCCBN		 SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_1 		0.450 1.000
RARA
M05608_2.00 		Homo sapiens
NVGGKCAYGNCCBN
NVGGNCRTGMCCBN		 SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_2 		0.450 1.000
RARA
M05609_2.00 		Homo sapiens
NRRGGTCANV
BNTGACCYYN		 SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_3 		0.450 1.000
RARB
M05563_2.00 		Homo sapiens
NHAAGGTCAN
NTGACCTTDN		 SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_1 		0.450 1.000
RARB
M05564_2.00 		Homo sapiens
RRGGTCAARRGGTCAN
NTGACCYYTTGACCYY		 SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_2 		0.450 1.000
RARB
M05565_2.00 		Homo sapiens
DAGGTCAYGACCYY
RRGGTCRTGACCTH		 SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_3 		0.450 1.000
RARA
M05878_2.00 		Homo sapiens
RAGGTCA
TGACCTY		 SMiLE-seq
Isakova et al.(2017)
RARa 		0.450 1.000
RARA
M09277_2.00 		Homo sapiens
RRRDVDBSNDRAGKTCARGG
CCYTGAMCTYHNSVHBHYYY		 Misc
Kulakovskiy et al.(2013)
RARA_HUMAN.H11MO.0.A 		0.450 1.000
Rara
M09329_2.00 		Mus musculus
RGRTCRDRAGKTCAAGGTCA
TGACCTTGAMCTYHYGAYCY		 Misc
Kulakovskiy et al.(2013)
RARA_MOUSE.H11MO.0.A 		0.450 1.000
RARA
M11137_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NR1B1_Q6 		0.450 1.000
RARB
M11094_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NR1B2_Q6 		0.450 1.000
RARA
M05610_2.00 		Homo sapiens
DRGGKCRNDRGGTCRN
NYGACCYHNYGMCCYH		 SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_1 		0.450 1.000
RARA
M05611_2.00 		Homo sapiens
NVGGTCAYGMCCYN
NRGGKCRTGACCBN		 SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_2 		0.450 1.000
RARA
M05612_2.00 		Homo sapiens
NRAGGTCANN
NNTGACCTYN		 SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_3 		0.450 1.000
RARB
M05566_2.00 		Homo sapiens
NHRAGGTCAH
DTGACCTYDN		 SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_1 		0.450 1.000
RARB
M05567_2.00 		Homo sapiens
RRGGTCAHRRGGTCAN
NTGACCYYDTGACCYY		 SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_2 		0.450 1.000
RARB
M05568_2.00 		Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY		 SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_3 		0.450 1.000
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000002797 Nuclear receptor 109 138

Links

Other Nuclear receptor family TFs
Other Gadus morhua TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000016234 Ailuropoda melanoleuca ENSAMEG00000016234 I
Alligator_sinensis_CCG011983.1 Alligator sinensis Alligator_sinensis_CCG011983.1 I
ENSAPLG00000012403 Anas platyrhynchos ENSAPLG00000012403 I
ENSAMXG00000007663 Astyanax mexicanus ENSAMXG00000007663 I
ENSAMXG00000008540 Astyanax mexicanus ENSAMXG00000008540 I
PRDM12 Bos taurus ENSBTAG00000023797 I
gw.504.9.1 Branchiostoma floridae gw.504.9.1 I
fgenesh2_pg.scaffold_504000008 Branchiostoma floridae fgenesh2_pg.scaffold_504000008 I
PRDM12 Canis familiaris ENSCAFG00000023076 I
ENSCSAG00000014756 Chlorocebus sabaeus ENSCSAG00000014756 I
CGI_10016801 Crassostrea gigas CGI_10016801 I
prdm12b Danio rerio ENSDARG00000007430 I
PRDM12 Dasypus novemcinctus ENSDNOG00000042302 I
ENSFALG00000001445 Ficedula albicollis ENSFALG00000001445 I
ENSGMOG00000011797 Gadus morhua ENSGMOG00000011797 I
PRDM12 Gallus gallus ENSGALG00000003895 I
prdm12b Gasterosteus aculeatus ENSGACG00000016713 I
PRDM12 Homo sapiens ENSG00000130711 D
ENSSTOG00000005986 Ictidomys tridecemlineatus ENSSTOG00000005986 I
ENSLACG00000017560 Latimeria chalumnae ENSLACG00000017560 I
ENSLOCG00000005429 Lepisosteus oculatus ENSLOCG00000005429 I
LotgiG130157 Lottia gigantea LotgiG130157 I
PRDM12 Loxodonta africana ENSLAFG00000006979 I
ENSMEUG00000003828 Macropus eugenii ENSMEUG00000003828 I
PRDM12 Meleagris gallopavo ENSMGAG00000005438 I
PRDM12 Microcebus murinus ENSMICG00000015480 I
PRDM12 Monodelphis domestica ENSMODG00000012108 I
Prdm12 Mus musculus ENSMUSG00000079466 I
NEMVEDRAFT_v1g119550 Nematostella vectensis NEMVEDRAFT_v1g119550 I
PRDM12 Ochotona princeps ENSOPRG00000008680 I
Ocbimv22004421m.g Octopus bimaculoides Ocbimv22004421m.g I
Ogr15453 Ophisaurus gracilis Ogr15453 I
ENSONIG00000002871 Oreochromis niloticus ENSONIG00000002871 I
ENSOANG00000001043 Ornithorhynchus anatinus ENSOANG00000001043 I
PRDM12 Oryctolagus cuniculus ENSOCUG00000008241 I
prdm12b Oryzias latipes ENSORLG00000007114 I
ENSORLG00000017558 Oryzias latipes ENSORLG00000017558 I
PRDM12 Otolemur garnettii ENSOGAG00000007557 I
PRDM12 Pan troglodytes ENSPTRG00000021475 I
ENSPANG00000025967 Papio anubis ENSPANG00000025967 I
ENSPSIG00000006739 Pelodiscus sinensis ENSPSIG00000006739 I
ENSPFOG00000019841 Poecilia formosa ENSPFOG00000019841 I
Pvit_04639 Pogona vitticeps Pvit_04639 I
ENSPPYG00000019694 Pongo abelii ENSPPYG00000019694 I
PRDM12 Pteropus vampyrus ENSPVAG00000001511 I
Prdm12 Rattus norvegicus ENSRNOG00000009218 I
Sakowv30035316m.g Saccoglossus kowalevskii Sakowv30035316m.g I
ENSSHAG00000015972 Sarcophilus harrisii ENSSHAG00000015972 I
PRDM12 Sus scrofa ENSSSCG00000005703 I
prdm12b Takifugu rubripes ENSTRUG00000018659 I
ENSTRUG00000013239 Takifugu rubripes ENSTRUG00000013239 I
ENSTNIG00000005859 Tetraodon nigroviridis ENSTNIG00000005859 I
TriadG14897 Trichoplax adhaerens TriadG14897 I
prdm12.L Xenopus laevis XB-GENE-953734 I
prdm12 Xenopus tropicalis XB-GENE-953729 I