CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ppa-nhr-47
(
Pristionchus pacificus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
PPA28835
T305940_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA28835
Nuclear receptor
9
74
TLCVVCDDLATGNHYSVPSCNGCKTFFRRAVVNNRNFACMGNEDCPVNKAIQNDRDRIGYTKRTRK
Links
Other
Nuclear receptor
family TFs
Other
Pristionchus pacificus
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_10178
Aegilops tauschii
F775_10178
N
MLOC_51817
Hordeum vulgare
MLOC_51817
N
OBART02G37310
Oryza barthii
OBART02G37310
N
ORGLA02G0325300
Oryza glaberrima
ORGLA02G0325300
N
OGLUM02G38450
Oryza glumaepatula
OGLUM02G38450
N
BGIOSGA009295
Oryza indica
BGIOSGA009295
N
OMERI02G35090
Oryza meridionalis
OMERI02G35090
N
ONIVA02G40070
Oryza nivara
ONIVA02G40070
N
OPUNC02G34470
Oryza punctata
OPUNC02G34470
N
ORUFI02G38810
Oryza rufipogon
ORUFI02G38810
N
OS02G0817000
Oryza sativa
OS02G0817000
N
Pavir.Ab03236
Panicum virgatum
Pavir.Ab03236
N
Traes_6AL_6E9EB1143
Triticum aestivum
Traes_6AL_6E9EB1143
N
Traes_6BL_70715AAF9
Triticum aestivum
Traes_6BL_70715AAF9
N
Traes_6DL_917D35DED
Triticum aestivum
Traes_6DL_917D35DED
N
TRIUR3_25071
Triticum urartu
TRIUR3_25071
N