CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ar *(Xenopus tropicalis)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00105 (zf-C4)	IPR001628	XB-GENE-479429	T307251_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Ar M00821_2.00	Mus musculus	NRRGAACAYN	NRTGTTCYYN	PBM Weirauch et al.(2013) pTH1739	0.992	1.000
AR M03389_2.00	Homo sapiens	DRGWACRHVDYGTWCCY	RGGWACRHBDYGTWCYH	SELEX Jolma et al.(2013) AR_1	0.992	1.000
AR M03390_2.00	Homo sapiens	DRGWACAYNRTGTWCYY	RRGWACAYNRTGTWCYH	SELEX Jolma et al.(2013) AR_2	0.992	1.000
Ar M03436_2.00	Mus musculus	NRGHACAYNVYGTWCYN	NRGWACRBNRTGTDCYN	SELEX Jolma et al.(2013) Ar_1	0.992	1.000
AR M09288_2.00	Homo sapiens	DRYAAAYADNNNRGNACA	TGTNCYNNNHTRTTTRYH	Misc Kulakovskiy et al.(2013) ANDR_HUMAN.H11MO.0.A	0.992	1.000
Ar M09331_2.00	Mus musculus	NRGNACABRVTGTNCY	RGNACABYVTGTNCYN	Misc Kulakovskiy et al.(2013) ANDR_MOUSE.H11MO.0.A	0.992	1.000
AR M09610_2.00	Homo sapiens	NRGNACABNVTGTNCY	RGNACABNVTGTNCYN	Misc Heinz et al.(2010) LNCAP-AR_GSE27824	0.992	1.000
AR M09609_2.00	Homo sapiens	SHDRGVACAS	STGTBCYHDS	Misc Heinz et al.(2010) LNCaP-AR_GSE27824	0.992	1.000
AR M11157_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_01	0.992	1.000
AR M11158_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_02	0.992	1.000
AR M11159_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_03	0.992	1.000
AR M11160_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_04	0.992	1.000
AR M11161_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_11	0.992	1.000
AR M11162_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_13	0.992	1.000
AR M11163_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_14_H	0.992	1.000
AR M11164_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_Q2	0.992	1.000
AR M11165_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_Q6_01	0.992	1.000
AR M11166_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_Q6	0.992	1.000
NR3C1 M03366_2.00	Homo sapiens	NRGWACAYNRTGTWCYH	DRGWACAYNRTGTWCYN	SELEX Jolma et al.(2013) NR3C1_1	0.978	0.786
NR3C1 M05587_2.00	Homo sapiens	RGDACAYWDTGTHCY	RGDACAHWRTGTHCY	SELEX Yin et al.(2017) NR3C1_eDBD_HT-SELEX	0.978	0.786
NR3C1 M07986_2.00	Homo sapiens	DGNACABYBTGTNC	GNACAVRVTGTNCH	ChIP-seq Gerstein et al.(2012) A549_GR_HudsonAlpha	0.978	0.786
NR3C1 M07987_2.00	Homo sapiens	NNNNRGNACAYBBTGTHCYNN	NNRGDACAVVRTGTNCYNNNN	ChIP-seq Gerstein et al.(2012) ECC-1_GR_HudsonAlpha	0.978	0.786
NR3C1 M09270_2.00	Homo sapiens	DGNACABKNTGTNCY	RGNACANMVTGTNCH	Misc Kulakovskiy et al.(2013) GCR_HUMAN.H11MO.0.A	0.978	0.786
NR3C1 M09607_2.00	Homo sapiens	NRGNACABNVTGTNCY	RGNACABNVTGTNCYN	Misc Heinz et al.(2010) A549-GR_GSE32465	0.978	0.786
NR3C1 M11119_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GR_01	0.978	0.786
NR3C1 M11120_2.00	Homo sapiens	KKYACMRDVTGTYCTK	MAGRACABHYKGTRMM	Transfac Matys et al.(2006) V$GRE_C	0.978	0.786
NR3C1 M11121_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GR_Q4	0.978	0.786
NR3C1 M11122_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GR_Q6_01	0.978	0.786
NR3C1 M11123_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GR_Q6_02	0.978	0.786
NR3C1 M11124_2.00	Homo sapiens	NNWGVACANWDNNDNBHNN	NNDVNHNNHWNTGTBCWNN	Transfac Matys et al.(2006) V$GR_Q6	0.978	0.786
NR3C1 M11125_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR3C1_04	0.978	0.786
NR3C1 M05588_2.00	Homo sapiens	RGDACANDRYGTHCY	RGDACRYHNTGTHCY	SELEX Yin et al.(2017) NR3C1_eDBD_Methyl-HT-SELEX	0.978	0.786
PGR M03923_2.00	Homo sapiens	DGNACANNNYGTNCY	RGNACRNNNTGTNCH	SELEX Nitta et al.(2015) PGR_1	0.977	0.800
PGR M09266_2.00	Homo sapiens	RGNACWBYBTGTNCYN	NRGNACAVRVWGTNCY	Misc Kulakovskiy et al.(2013) PRGR_HUMAN.H11MO.0.A	0.977	0.800
Pgr M09326_2.00	Mus musculus	RGNACWBYNTGTNCY	RGNACANRVWGTNCY	Misc Kulakovskiy et al.(2013) PRGR_MOUSE.H11MO.0.A	0.977	0.800
PGR M09603_2.00	Homo sapiens	RNACWNNNWGTNCHN	NDGNACWNNNWGTNY	Misc Heinz et al.(2010) T47D-PR_GSE31130	0.977	0.800
PGR M11095_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PR_01	0.977	0.800
PGR M11096_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PR_02	0.977	0.800
PGR M11097_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PR_Q6	0.977	0.800
NR3C2 M02395_2.00	Homo sapiens	NNRGDACAN	NTGTHCYNN	PBM Weirauch et al.(2014) pTH5924	0.974	0.771
NR3C2 M03382_2.00	Homo sapiens	NRGDACAHDRTGTHCYN	NRGDACAYHDTGTHCYN	SELEX Jolma et al.(2013) NR3C2_1	0.974	0.771
NR3C2 M05637_2.00	Homo sapiens	NGNACRNNNYGTNCN	NGNACRNNNYGTNCN	SELEX Yin et al.(2017) NR3C2_eDBD_HT-SELEX	0.974	0.771
NR3C2 M05638_2.00	Homo sapiens	NGNACRNNVYGTNCN	NGNACRBNNYGTNCN	SELEX Yin et al.(2017) NR3C2_eDBD_Methyl-HT-SELEX	0.974	0.771
Nr3c1 M05886_2.00	Mus musculus	DGDACDBYNTGTNCY	RGNACANRVHGTHCH	SMiLE-seq Isakova et al.(2017) GR	0.974	0.771
Nr3c1 M09318_2.00	Mus musculus	RGNACABYNTGTNCY	RGNACANRVTGTNCY	Misc Kulakovskiy et al.(2013) GCR_MOUSE.H11MO.0.A	0.974	0.771
Nr3c1 M09614_2.00	Mus musculus	NRGDACABNNTGTNC	GNACANNVTGTHCYN	Misc Heinz et al.(2010) RAW264.7-GRE_Unpublished	0.974	0.771
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
XP_002941888	Nuclear receptor	19	88	KTCLICGDEASGCHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTL

Links
Other Nuclear receptor family TFs
Other *Xenopus tropicalis* TFs

271 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Alligator_sinensis_CCG016667.1	Alligator sinensis	Alligator_sinensis_CCG016667.1	N	0.000
ENSAPLG00000014876	Anas platyrhynchos	ENSAPLG00000014876	N	0.000
TRERF1	Anolis carolinensis	ENSACAG00000001080	N	0.000
ENSBTAP00000020376-D1	Bos grunniens	ENSBTAP00000020376-D1	N	0.000
TRERF1	Bos taurus	ENSBTAG00000015321	N	0.000
TRERF1	Callithrix jacchus	ENSCJAG00000004347	N	0.000
Aan_R011464	Calypte anna	Aan_R011464	N	0.000
TRERF1	Canis familiaris	ENSCAFG00000001642	N	0.000
TRERF1	Cavia porcellus	ENSCPOG00000015717	N	0.000
Cmyd_10010458	Chelonia mydas	Cmyd_10010458	N	0.000
TRERF1	Choloepus hoffmanni	ENSCHOG00000006120	N	0.000
TRERF1	Equus caballus	ENSECAG00000016971	N	0.000
TRERF1	Felis catus	ENSFCAG00000011210	N	0.000
ENSFALG00000012590	Ficedula albicollis	ENSFALG00000012590	N	0.000
TRERF1	Gallus gallus	ENSGALG00000009896	N	0.000
TRERF1	Gorilla gorilla	ENSGGOG00000012813	N	0.000
TRERF1	Homo sapiens	ENSG00000124496	N	0.000
ENSSTOG00000022996	Ictidomys tridecemlineatus	ENSSTOG00000022996	N	0.000
ENSLACG00000008926	Latimeria chalumnae	ENSLACG00000008926	N	0.000
ENSLOCG00000017240	Lepisosteus oculatus	ENSLOCG00000017240	N	0.000
TRERF1	Loxodonta africana	ENSLAFG00000007825	N	0.000
ENSP00000362013	Macaca fascicularis	ENSP00000362013	N	0.000
TRERF1	Meleagris gallopavo	ENSMGAG00000013894	N	0.000
TRERF1	Monodelphis domestica	ENSMODG00000019042	N	0.000
ENSMPUG00000013360	Mustela putorius furo	ENSMPUG00000013360	N	0.000
TRERF1	Myotis lucifugus	ENSMLUG00000016748	N	0.000
ENSNLEG00000004772	Nomascus leucogenys	ENSNLEG00000004772	N	0.000
Ogr07462	Ophisaurus gracilis	Ogr07462	N	0.000
TRERF1	Ornithorhynchus anatinus	ENSOANG00000008467	N	0.000
TRERF1	Otolemur garnettii	ENSOGAG00000025610	N	0.000
ENSOARG00000003358	Ovis aries	ENSOARG00000003358	N	0.000
ENSPANG00000009451	Papio anubis	ENSPANG00000009451	N	0.000
ENSPSIG00000009755	Pelodiscus sinensis	ENSPSIG00000009755	N	0.000
Pvit_13408	Pogona vitticeps	Pvit_13408	N	0.000
ENSPPYG00000016614	Pongo abelii	ENSPPYG00000016614	N	0.000
TRERF1	Pteropus vampyrus	ENSPVAG00000007626	N	0.000
Trerf1	Rattus norvegicus	ENSRNOG00000022598	N	0.000
ENSSHAG00000004599	Sarcophilus harrisii	ENSSHAG00000004599	N	0.000
TRERF1	Sus scrofa	ENSSSCG00000001639	N	0.000
TRERF1	Taeniopygia guttata	ENSTGUG00000003250	N	0.000
ENSTSYG00000003874	Tarsius syrichta	ENSTSYG00000003874	N	0.000
ENSTBEG00000012133	Tupaia belangeri	ENSTBEG00000012133	N	0.000
TRERF1	Tursiops truncatus	ENSTTRG00000014065	N	0.000
trerf1	Xenopus tropicalis	XB-GENE-940630	N	0.000

ar (Xenopus tropicalis) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

271 Related TFs

ar **(Xenopus tropicalis)
Nuclear receptor**