PAX1 (Tursiops truncatus)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSTTRG00000002444 T311853_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		1.000 1.000
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		1.000 1.000
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		1.000 1.000
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.960 0.960
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.960 0.960
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.960 0.960
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.952 0.952
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.880 0.880
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.880 0.880
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.880 0.880
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.752 0.752
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.744 0.744
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.744 0.744
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.736 0.736
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.736 0.736
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.736 0.736
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.736 0.736
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.736 0.736
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.736 0.736
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.736 0.736
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.736 0.736
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.736 0.736
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.736 0.736
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.736 0.736
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.736 0.736
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.736 0.736
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.736 0.736
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.736 0.736
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.736 0.736
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.728 0.728
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.728 0.728
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.728 0.728
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.728 0.728
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.728 0.728
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.712 0.712
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.712 0.712
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000002289 Paired box 85 209

Links

Other Paired box family TFs
Other Tursiops truncatus TFs

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I
LBD3 Arabidopsis thaliana AT1G16530 I
LBD4 Arabidopsis thaliana AT1G31320 D
LBD12 Arabidopsis thaliana AT2G30130 I
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I
Bo3g024350 Brassica oleracea Bo3g024350 I
Bo4g059700 Brassica oleracea Bo4g059700 I
Bo4g170770 Brassica oleracea Bo4g170770 I
Bo5g021980 Brassica oleracea Bo5g021980 I
Bo7g041000 Brassica oleracea Bo7g041000 I
Bo8g105450 Brassica oleracea Bo8g105450 I
Bra014907 Brassica rapa Bra014907 I
Bra018335 Brassica rapa Bra018335 I
Bra021612 Brassica rapa Bra021612 I
Bra022780 Brassica rapa Bra022780 I
Bra026042 Brassica rapa Bra026042 I
Bra026716 Brassica rapa Bra026716 I
PK11564.1 Cannabis sativa PK11564.1 I
PK24688.1 Cannabis sativa PK24688.1 I
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I
Carubv10010462m.g Capsella rubella Carubv10010462m.g I
Carubv10025543m.g Capsella rubella Carubv10025543m.g I
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I
Ca_06548 Cicer arietinum Ca_06548 I
Ca_08998 Cicer arietinum Ca_08998 I
Ca_12450 Cicer arietinum Ca_12450 I
Ca_13388 Cicer arietinum Ca_13388 I
Ca_13575 Cicer arietinum Ca_13575 I
Cla005598 Citrullus lanatus Cla005598 I
Cla007354 Citrullus lanatus Cla007354 I
Cla009336 Citrullus lanatus Cla009336 I
Cla013678 Citrullus lanatus Cla013678 I
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I
Cucsa.118370 Cucumis sativus Cucsa.118370 I
Cucsa.144430 Cucumis sativus Cucsa.144430 I
Cucsa.236600 Cucumis sativus Cucsa.236600 I
Cucsa.239660 Cucumis sativus Cucsa.239660 I
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I
GLYMA02G43030 Glycine max GLYMA02G43030 I
GLYMA07G35000 Glycine max GLYMA07G35000 I
GLYMA08G17990 Glycine max GLYMA08G17990 I
GLYMA09G02510 Glycine max GLYMA09G02510 I
GLYMA14G06140 Glycine max GLYMA14G06140 I
GLYMA15G13410 Glycine max GLYMA15G13410 I
GLYMA15G41020 Glycine max GLYMA15G41020 I
GLYMA18G02780 Glycine max GLYMA18G02780 I
GLYMA20G02850 Glycine max GLYMA20G02850 I
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I
MLOC_54949 Hordeum vulgare MLOC_54949 I
LPERR03G23450 Leersia perrieri LPERR03G23450 I
LPERR05G10020 Leersia perrieri LPERR05G10020 I
Lus10007525.g Linum usitatissimum Lus10007525.g I
Lus10018275.g Linum usitatissimum Lus10018275.g I
Lus10031191.g Linum usitatissimum Lus10031191.g I
Lus10031285.g Linum usitatissimum Lus10031285.g I
Lus10031769.g Linum usitatissimum Lus10031769.g I
Lus10031855.g Linum usitatissimum Lus10031855.g I
Lus10040638.g Linum usitatissimum Lus10040638.g I
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I
MDP0000121203 Malus domestica MDP0000121203 I
MDP0000155138 Malus domestica MDP0000155138 I
MDP0000194766 Malus domestica MDP0000194766 I
MDP0000265429 Malus domestica MDP0000265429 I
MDP0000268890 Malus domestica MDP0000268890 I
MDP0000284409 Malus domestica MDP0000284409 I
MDP0000861160 Malus domestica MDP0000861160 I
cassava20471.m1 Manihot esculenta cassava20471.m1 I
cassava20865.m1 Manihot esculenta cassava20865.m1 I
cassava26200.m1 Manihot esculenta cassava26200.m1 I
cassava27818.m1 Manihot esculenta cassava27818.m1 I
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I
MTR_2g068760 Medicago truncatula MTR_2g068760 I
MTR_3g071590 Medicago truncatula MTR_3g071590 I
MTR_4g083680 Medicago truncatula MTR_4g083680 I
MTR_5g083230 Medicago truncatula MTR_5g083230 I
mgf018189m Mimulus guttatus mgf018189m I
mgf019461m Mimulus guttatus mgf019461m I
mgf022958m Mimulus guttatus mgf022958m I
mgf026046m Mimulus guttatus mgf026046m I
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I
OBART05G12620 Oryza barthii OBART05G12620 I
OB05G20740 Oryza brachyantha OB05G20740 I
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I
BGIOSGA013249 Oryza indica BGIOSGA013249 I
BGIOSGA018244 Oryza indica BGIOSGA018244 I
BGIOSGA018245 Oryza indica BGIOSGA018245 I
OMERI01G39870 Oryza meridionalis OMERI01G39870 I
OMERI03G24920 Oryza meridionalis OMERI03G24920 I
OMERI05G11330 Oryza meridionalis OMERI05G11330 I
ONIVA03G29300 Oryza nivara ONIVA03G29300 I
ONIVA05G13090 Oryza nivara ONIVA05G13090 I
OPUNC05G10670 Oryza punctata OPUNC05G10670 I
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I
OS05G0346800 Oryza sativa OS05G0346800 I
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I
Pavir.J21476 Panicum virgatum Pavir.J21476 I
Pavir.J22399 Panicum virgatum Pavir.J22399 I
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I
Pm000193 Prunus mume Pm000193 I
Pm011040 Prunus mume Pm011040 I
Pm018982 Prunus mume Pm018982 I
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I
29729.m002278 Ricinus communis 29729.m002278 I
30169.m006340 Ricinus communis 30169.m006340 I
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I
Si024229m.g Setaria italica Si024229m.g I
Si037583m.g Setaria italica Si037583m.g I
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I
Sb01g012810 Sorghum bicolor Sb01g012810 I
Sb09g016240 Sorghum bicolor Sb09g016240 I
TCM_029315 Theobroma cacao TCM_029315 I
TCM_032557 Theobroma cacao TCM_032557 I
TCM_042212 Theobroma cacao TCM_042212 I
TCM_042447 Theobroma cacao TCM_042447 I
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I
TRIUR3_11841 Triticum urartu TRIUR3_11841 I
LBD4 Vitis vinifera VIT_00s0125g00290 I
ASL5 Vitis vinifera VIT_06s0004g07200 I
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I
LBD3 Vitis vinifera VIT_19s0027g01120 I
GRMZM2G044150 Zea mays GRMZM2G044150 I
GRMZM2G079185 Zea mays GRMZM2G079185 I
GRMZM2G447176 Zea mays GRMZM2G447176 I