Solyc12g100150.1 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc12g100150.1 T246113_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.798 0.798
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g100150.1.1 LOB 14 112

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.939
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.848
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.838
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.838
Cla013678 Citrullus lanatus Cla013678 I 0.838
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.838
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.838
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.838
PK11564.1 Cannabis sativa PK11564.1 I 0.838
Pm011040 Prunus mume Pm011040 I 0.828
MDP0000284409 Malus domestica MDP0000284409 I 0.828
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.828
MDP0000268890 Malus domestica MDP0000268890 I 0.828
30169.m006340 Ricinus communis 30169.m006340 I 0.828
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.828
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.828
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.818
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.818
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.818
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.818
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.818
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.818
MDP0000121203 Malus domestica MDP0000121203 I 0.818
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.818
Ca_06548 Cicer arietinum Ca_06548 I 0.818
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.808
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.808
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.808
TCM_032557 Theobroma cacao TCM_032557 I 0.808
TCM_029315 Theobroma cacao TCM_029315 I 0.808
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.808
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.808
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.808
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.808
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.808
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.808
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.808
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.808
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.808
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.808
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.808
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.808
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.808
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.808
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.798
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.798
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.798
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.798
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.798
Bra014907 Brassica rapa Bra014907 I 0.798
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.798
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.798
Bo7g041000 Brassica oleracea Bo7g041000 I 0.798
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.798
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.798
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.798
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.798
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.798
LBD4 Arabidopsis thaliana AT1G31320 D 0.798
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.788
Ca_13575 Cicer arietinum Ca_13575 I 0.788
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.788
mgf022958m Mimulus guttatus mgf022958m I 0.788
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.788
mgf026046m Mimulus guttatus mgf026046m I 0.788
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.788
PK24688.1 Cannabis sativa PK24688.1 I 0.788
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.788
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.788
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.788
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.778
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.778
Cla009336 Citrullus lanatus Cla009336 I 0.778
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.768
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.768
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.768
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.768
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.758
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.758
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.758
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.758
LBD3 Arabidopsis thaliana AT1G16530 I 0.758
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.758
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.758
Cla005598 Citrullus lanatus Cla005598 I 0.758
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.750
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.747
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.747
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.747
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.747
Pm000193 Prunus mume Pm000193 I 0.737
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.737
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.737
Bo8g105450 Brassica oleracea Bo8g105450 I 0.737
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.737
MDP0000265429 Malus domestica MDP0000265429 I 0.737
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.737
OBART05G12620 Oryza barthii OBART05G12620 I 0.737
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.737
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.737
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.737
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.737
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.737
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.737
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.737
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.737
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.737
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.737
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.737
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.737
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.737
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.737
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.733
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.732
OS05G0346800 Oryza sativa OS05G0346800 I 0.727
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.727
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.727
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.727
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.727
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.727
Ca_12450 Cicer arietinum Ca_12450 I 0.727
OB05G20740 Oryza brachyantha OB05G20740 I 0.727
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.727
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.727
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.727
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.727
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.727
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.727
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.727
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.727
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.727
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.727
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.727
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.727
mgf019461m Mimulus guttatus mgf019461m I 0.727
TCM_042447 Theobroma cacao TCM_042447 I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.727
Bra026042 Brassica rapa Bra026042 I 0.727
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.727
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.727
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.727
29729.m002278 Ricinus communis 29729.m002278 I 0.727
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.727
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.727
Si024229m.g Setaria italica Si024229m.g I 0.727
mgf018189m Mimulus guttatus mgf018189m I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.727
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.717
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.717
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.717
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.717
Bra026716 Brassica rapa Bra026716 I 0.717
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.717
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.717
Ca_13388 Cicer arietinum Ca_13388 I 0.717
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.717
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.717
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.717
Cla007354 Citrullus lanatus Cla007354 I 0.717
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.717
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.717
Pm018982 Prunus mume Pm018982 I 0.717
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.717
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.717
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.717
Bo5g021980 Brassica oleracea Bo5g021980 I 0.717
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
MDP0000155138 Malus domestica MDP0000155138 I 0.717
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.717
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.717
TCM_042212 Theobroma cacao TCM_042212 I 0.717
MDP0000861160 Malus domestica MDP0000861160 I 0.717
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.717
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.712
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.707
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.707
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.707
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
MDP0000194766 Malus domestica MDP0000194766 I 0.707
OBART03G28270 Oryza barthii OBART03G28270 I 0.705