Gfo_R002325 (Geospiza fortis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Gfo_R002325 T314438_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002325 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Geospiza fortis TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MCYG_08710 Arthroderma otae MCYG_08710 N 0.000
gw1.00083.300.1 Aspergillus carbonarius gw1.00083.300.1 N 0.000
fgenesh1_pg.00082_#_23 Aspergillus carbonarius fgenesh1_pg.00082_#_23 N 0.000
ACLA_088930 Aspergillus clavatus CADACLAG00008857 N 0.000
CADANGAG00006610 Aspergillus niger CADANGAG00006610 N 0.000
CADAORAG00005662 Aspergillus oryzae CADAORAG00005662 N 0.000
M437DRAFT_47167 Aureobasidium melanogenum M437DRAFT_47167 N 0.000
M438DRAFT_99004 Aureobasidium pullulans M438DRAFT_99004 N 0.000
COCC4DRAFT_64454 Bipolaris maydis COCC4DRAFT_64454 N 0.000
BDDG_07110 Blastomyces dermatitidis BDDG_07110 N 0.000
CPAG_04042 Candida parapsilosis CPAG_04042 N 0.000
CHGG_00926 Chaetomium globosum CHGG_00926 N 0.000
e_gw1.34.5.1 Cochliobolus heterostrophus C5 e_gw1.34.5.1 N 0.000
CGGC5_11092 Colletotrichum gloeosporioides CGGC5_11092 N 0.000
CH063_13215 Colletotrichum higginsianum CH063_13215 N 0.000
Cob_01477 Colletotrichum orbiculare Cob_01477 N 0.000
Cob_05129 Colletotrichum orbiculare Cob_05129 N 0.000
A1O9_00991 Exophiala aquamarina A1O9_00991 N 0.000
FOXG_02565 Fusarium oxysporum FOXG_02565 N 0.000
NechaG102087 Fusarium solani NechaG102087 N 0.000
MPH_11049 Macrophomina phaseolina MPH_11049 N 0.000
MCYG_00717 Microsporum canis MCYG_00717 N 0.000
MCYG_08710 Microsporum canis MCYG_08710 N 0.000
estExt_fgenesh1_pg.C_sca_41_chr12_2_00090 Nectria haematococca estExt_fgenesh1_pg.C_sca_41_chr12_2_00090 N 0.000
NFIA_059770 Neosartorya fischeri CADNFIAG00005104 N 0.000
PEX1_085400 Penicillium expansum PEX1_085400 N 0.000
PMAA_001430 Penicillium marneffei PMAA_001430 N 0.000
U727_00434363211 Penicillium solitum U727_00434363211 N 0.000
SAPIO_CDS3191 Scedosporium apiospermum SAPIO_CDS3191 N 0.000
SS1G_02247 Sclerotinia sclerotiorum SS1G_02247 N 0.000
S40288_04224 Stachybotrys chartarum S40288_04224 N 0.000
S40285_04043 Stachybotrys chlorohalonata S40285_04043 N 0.000
S40285_05664 Stachybotrys chlorohalonata S40285_05664 N 0.000
S40285_09207 Stachybotrys chlorohalonata S40285_09207 N 0.000
PMAA_001430 Talaromyces marneffei PMAA_001430 N 0.000
TSTA_058560 Talaromyces stipitatus TSTA_058560 N 0.000
UREG_04141 Uncinocarpus reesii UREG_04141 N 0.000