ENSCING00000002253 (Ciona intestinalis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSCING00000002253 T319347_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.867 0.867
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.867 0.867
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.867 0.867
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.867 0.867
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.867 0.867
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.867 0.867
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.867 0.867
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.867 0.867
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.867 0.867
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.867 0.867
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.867 0.867
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.867 0.867
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.867 0.867
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.867 0.867
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.867 0.867
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.867 0.867
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.867 0.867
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.867 0.867
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.867 0.867
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.867 0.867
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.867 0.867
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.867 0.867
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.867 0.867
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.867 0.867
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.853 0.853
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.853 0.853
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.853 0.853
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.853 0.853
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.853 0.853
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.853 0.853
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.853 0.853
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.853 0.853
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.853 0.853
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.853 0.853
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.853 0.853
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.853 0.853
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.720 0.720
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.720 0.720
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.720 0.720
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.720 0.720
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000004611 Runt 1 75

Links

Other Runt family TFs
Other Ciona intestinalis TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014550 Aedes aegypti AAEL014550 I 0.000
ADAC004901 Anopheles darlingi ADAC004901 I 0.000
AGOS_AFL049C Ashbya gossypii AGOS_AFL049C I 0.000
M437DRAFT_13662 Aureobasidium melanogenum M437DRAFT_13662 I 0.000
M438DRAFT_396225 Aureobasidium pullulans M438DRAFT_396225 I 0.000
AUEXF2481DRAFT_26059 Aureobasidium subglaciale AUEXF2481DRAFT_26059 I 0.000
BAUCODRAFT_212345 Baudoinia compniacensis BAUCODRAFT_212345 I 0.000
CAGL0C01551g Candida glabrata CAGL0C01551g I 0.000
CAGL0H02959g Candida glabrata CAGL0H02959g D 0.000
CAOG_08013 Capsaspora owczarzaki CAOG_08013 I 0.000
DOTSEDRAFT_23295 Dothistroma septosporum DOTSEDRAFT_23295 I 0.000
ENSETEG00000011891 Echinops telfairi ENSETEG00000011891 I 0.000
Ecym_2247 Eremothecium cymbalariae Ecym_2247 I 0.000
KAFR_0A04370 Kazachstania africana KAFR_0A04370 I 0.000
KAFR_0G03650 Kazachstania africana KAFR_0G03650 I 0.000
KNAG_0F02210 Kazachstania naganishii KNAG_0F02210 I 0.000
KNAG_0M00500 Kazachstania naganishii KNAG_0M00500 I 0.000
KLLA0_B10450g Kluyveromyces lactis KLLA0_B10450g I 0.000
KLTH0H05236g Kluyveromyces thermotolerans KLTH0H05236g I 0.000
Kwal_11092 Kluyveromyces waltii Kwal_11092 I 0.000
PAS_chr3_0590 Komagataella pastoris PAS_chr3_0590 I 0.000
KUCA_T00004797001 Kuraishia capsulata KUCA_T00004797001 I 0.000
SAKL0A05610g Lachancea kluyveri SAKL0A05610g I 0.000
KLTH0H05236g Lachancea thermotolerans KLTH0H05236g I 0.000
DI09_143p10 Microsporidia sp DI09_143p10 I 0.000
fgenesh1_pg.C_chr_3000478 Mycosphaerella graminicola fgenesh1_pg.C_chr_3000478 I 0.000
NCAS_0H01130 Naumovozyma castellii NCAS_0H01130 I 0.000
NDAI_0F02170 Naumovozyma dairenensis NDAI_0F02170 I 0.000
NDAI_0I01320 Naumovozyma dairenensis NDAI_0I01320 I 0.000
HPODL_01870 Ogataea parapolymorpha HPODL_01870 I 0.000
XP_002492817.1 Pichia pastoris XP_002492817.1 I 0.000
ENSPVAG00000016033 Pteropus vampyrus ENSPVAG00000016033 I 0.000
nRc.2.0.1.g06302 Romanomermis culicivorax nRc.2.0.1.g06302 I 0.000
O9G_002924 Rozella allomycis O9G_002924 I 0.000
SU7_3505 Saccharomyces arboricola SU7_3505 I 0.000
8079_YGL096W Saccharomyces bayanus 8079_YGL096W I 0.000
24630_YPL177C Saccharomyces bayanus 24630_YPL177C I 0.000
Scas_Contig597.15 Saccharomyces castellii Scas_Contig597.15 I 0.000
CUP9 Saccharomyces cerevisiae YPL177C D 0.000
SKUD_191904 Saccharomyces kudriavzevii SKUD_191904 I 0.000
21608_YPL177C Saccharomyces mikatae 21608_YPL177C I 0.000
7936_YGL096W Saccharomyces mikatae 7936_YGL096W I 0.000
22207_YPL177C Saccharomyces paradoxus 22207_YPL177C I 0.000
8695_YGL096W Saccharomyces paradoxus 8695_YGL096W I 0.000
AACERI_AaceriAFL049C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL049C I 0.000
PTSG_05211 Salpingoeca rosetta PTSG_05211 I 0.000
SEPMUDRAFT_148705 Sphaerulina musiva SEPMUDRAFT_148705 I 0.000
TBLA_0C03740 Tetrapisispora blattae TBLA_0C03740 I 0.000
TPHA_0B02580 Tetrapisispora phaffii TPHA_0B02580 I 0.000
TDEL_0F01810 Torulaspora delbrueckii TDEL_0F01810 I 0.000
Kpol_1036p56 Vanderwaltozyma polyspora Kpol_1036p56 I 0.000
ZBAI_07775 Zygosaccharomyces bailii ZBAI_07775 I 0.000
ZBAI_04266 Zygosaccharomyces bailii ZBAI_04266 I 0.000
ZYRO0G22044g Zygosaccharomyces rouxii ZYRO0G22044g I 0.000
Mycgr3G91768 Zymoseptoria tritici Mycgr3G91768 I 0.000